Davis Strawberry Project Microsatellite Analysis
The type and frequency of simple sequence repeats in this fragaria EST dataset (tdavis) were determined using the CUGIssr.pl program. For these searches, SSRs are defined as dinucleotides repeated at least 5 times, trinucleotides repeated at least 4 times, tetranucleotides repeated at least 3 times, or pentanucleotides repeated at least 2 times.
| Number of Sequences | 2717 |
| Number of Sequences Having One Or More SSRs | 480 |
| Percentage of Sequences Having One Or More SSRs | 17.7% |
| Total Number of SSRs Found | 664 |
| Number of Motifs | 146 |
Frequency of Motif Type
| Motif Length | Frequency | Percentage Frequency |
| 2 bp | 174 | 26.2 % |
| 3 bp | 259 | 39.0% |
| 4 bp | 193 | 29.1% |
| 5 bp | 38 | 5.7% |
