GeneMark Hybrid Transcripts

GeneMark gene prediction by Mark Borodovsky, Paul Burns and Alexandre Lomsadze (Georgia Institute of Technology, Atlanta, Georgia, USA) with EST data constraints released 16-11-2009. The ab initio predictions for Fragaria vesca were created using the new 2.51 version of the GeneMark-ES program1 developed by Paul Burns. This program uses an iterative self-training algorithm to train a GMHMM gene model, which is used for gene prediction inside the iterative training as well as for the final prediction step. [1]Lomsadze A., Ter-Hovhannisyan V., Chernoff Y. and Borodovsky M. Gene identification in novel eukaryotic genomes by self-training algorithm. Nucleic Acids Research, 2005, Vol. 33, No. 20, 6494-6506