MDP0000250519, MDP0000250519 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000250519
Unique NameMDP0000250519
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length1299
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000250519_exon_1MDP0000250519_exon_1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000250519MDP0000250519Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 74..140
score: 3.5e-17coord: 169..236
score: 1.4
IPR000504RNA recognition motif domainSMARTSM00360RNA recognition motifcoord: 73..145
score: 9.4e-22coord: 168..240
score: 3.2
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 72..149
score: 16.091coord: 167..247
score: 12
IPR012677Nucleotide-binding, alpha-beta plaitGENE3D3.30.70.330no descriptioncoord: 67..152
score: 3e-22coord: 165..259
score: 3
NoneNo IPR availablePANTHERPTHR24011FAMILY NOT NAMEDcoord: 58..432
score: 1.7e
NoneNo IPR availablePANTHERPTHR24011:SF217SUBFAMILY NOT NAMEDcoord: 58..432
score: 1.7e
NoneNo IPR availableSEGsegsegcoord: 147..162
score: NAcoord: 244..263
score: NAcoord: 274..314
score: NAcoord: 316..390
score
NoneNo IPR availableSUPERFAMILY54928RNA-binding domain, RBDcoord: 72..148
score: 1.4e-22coord: 155..269
score: 3.8
NoneNo IPR availableSEGsegsegcoord: 4..12
score: NAcoord: 18..93
score
NoneNo IPR availableSEGsegsegcoord: 1..17
score
NoneNo IPR availableSEGsegsegcoord: 9..23
score: NAcoord: 43..70
score: NAcoord: 74..88
score
NoneNo IPR availableSEGsegsegcoord: 8..32
score: NAcoord: 64..77
score
NoneNo IPR availableSEGsegsegcoord: 94..115
score: NAcoord: 118..151
score: NAcoord: 170..178
score
NoneNo IPR availableSEGsegsegcoord: 62..86
score: NAcoord: 210..216
score
NoneNo IPR availableSEGsegsegcoord: 19..50
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000250519 ID=MDP0000250519; Name=MDP0000250519; organism=Malus x domestica; type=mRNA; length=1299bp
ATGGACGCAACCAAGAAGCGCAAGCTCGACGAAAACGGTRTCGTTCTAGA
CACAGATCCCTCCTCCSCTCCCAAGCTTTCCCCCGAAGATGCTCGCAGGC
TCATCGAGCGATTCACCCCCGATCAACTCCTCGACATTCTCCAGGACGCC
CTCTCCCGCCACRTCGACGTCCTCGACGCCGTCCGCTCCATCGCCGATCC
CGACGCCTCCCAGCGCAAGCTCTTCATCCGCGGCCTCGGCTGGGACACCA
CCACCGAGGGCCTCCGATCCCTCTTTTCCGCCTACGGAGAGATCGAGGAG
GCCATCGTCATCCTCGACAAAACCACCGGGAAATCCAAGGGTTATGGATT
CGTCACGTTCCGCCACGTCGACGGCGCTCTCATGGCCCTGAAAGAACCCA
GCAAGAAGATCGACGGCCGCATGACCGTCACGCAGCTCGCCTCCGCGGGG
AATTCGAACTCCAATACTGCCTCCAACAACGTCGCCGACGTATCGTTGCG
GAAGATATATGTGGCCAATGTTCCGTACGACATGCCGTCGGATAAGCTCT
TGGCCCATTTTGCCCTGTACGGGGAGATAGAGGAGGGGCCGCTAGGCTTT
GATAAGCAGACTGGGAAGTGCAAGGGGTATGCGCTGTTTGTGTATAAGAC
TCCGGAGGGGGCTCAGGCGGCACTCGTCGATCCGGTGAAGAACATCGAGG
GGAGRCAATTGACTTGTAAATTGGCGATTGATGGGAAAAAGGGCAAGTCA
GACGGGCCGGGTCAGGGTCAAGGACCCGGGAGTGGGTCCAATACGCACGG
CGATGGGATGGGGATGGCACCACCGTCTTCGATTCCTGGGCAGTACGGCA
TCCCAGGTGGAATTGGTTCTTATGGTGGGTATACCAGTGGGCTTCAGGGC
CAGCCTCCGTTGGGTCACCATCCATTGGGTGGGCCTGGGTTGTCTGGTAT
CGGAAACCAGGTGAATTCGGGTTTGGGTGGTGGTGGCGGATATGGAGGGT
TGGGTGGGCCTTATGGTAACTATGGCGGCCCTGGGGGTTATGGTTTAGGT
GGTGCTGGTGGGCTAGGTGTTGGACTAGGTGGTGCTGGGTCGGCTGGTGG
TGGTCCGGGTGTGGGTACCGGGTCGTCTTTGTATGGATTGCCTCCGAGTT
CAGGTGGGTTACCATCTGGGAGGTATCCAGAGGGCGGGCACTACGGCCTG
TCGGCATATCAGAATCAGCACCACCAGCAAGCTGGGACRTCCCCCCATCC
AAGGGTTCCGCAAGGTGGCATGTACCCAAATGTGCCACCTTATTTCTGA
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protein sequence of MDP0000250519

>MDP0000250519 ID=MDP0000250519; Name=MDP0000250519; organism=Malus x domestica; type=polypeptide; length=432bp
MDATKKRKLDENGXVLDTDPSSXPKLSPEDARRLIERFTPDQLLDILQDA
LSRHXDVLDAVRSIADPDASQRKLFIRGLGWDTTTEGLRSLFSAYGEIEE
AIVILDKTTGKSKGYGFVTFRHVDGALMALKEPSKKIDGRMTVTQLASAG
NSNSNTASNNVADVSLRKIYVANVPYDMPSDKLLAHFALYGEIEEGPLGF
DKQTGKCKGYALFVYKTPEGAQAALVDPVKNIEGRQLTCKLAIDGKKGKS
DGPGQGQGPGSGSNTHGDGMGMAPPSSIPGQYGIPGGIGSYGGYTSGLQG
QPPLGHHPLGGPGLSGIGNQVNSGLGGGGGYGGLGGPYGNYGGPGGYGLG
GAGGLGVGLGGAGSAGGGPGVGTGSSLYGLPPSSGGLPSGRYPEGGHYGL
SAYQNQHHQQAGTSPHPRVPQGGMYPNVPPYF
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mRNA from alignment at chr3:28587611..28588909-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000250519 ID=MDP0000250519; Name=MDP0000250519; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr3:28587611..28588909- (Malus x domestica
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mRNA from alignment at MDC008987.283:1533..2831-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000250519 ID=MDP0000250519; Name=MDP0000250519; organism=Malus x domestica; type=mRNA; length=1299bp; location=Sequence derived from: MDC008987.283:1533..2831- (Malus x domestica
ATGGACGCAACCAAGAAGCGCAAGCTCGACGAAAACGGTRTCGTTCTAGA
CACAGATCCCTCCTCCSCTCCCAAGCTTTCCCCCGAAGATGCTCGCAGGC
TCATCGAGCGATTCACCCCCGATCAACTCCTCGACATTCTCCAGGACGCC
CTCTCCCGCCACRTCGACGTCCTCGACGCCGTCCGCTCCATCGCCGATCC
CGACGCCTCCCAGCGCAAGCTCTTCATCCGCGGCCTCGGCTGGGACACCA
CCACCGAGGGCCTCCGATCCCTCTTTTCCGCCTACGGAGAGATCGAGGAG
GCCATCGTCATCCTCGACAAAACCACCGGGAAATCCAAGGGTTATGGATT
CGTCACGTTCCGCCACGTCGACGGCGCTCTCATGGCCCTGAAAGAACCCA
GCAAGAAGATCGACGGCCGCATGACCGTCACGCAGCTCGCCTCCGCGGGG
AATTCGAACTCCAATACTGCCTCCAACAACGTCGCCGACGTATCGTTGCG
GAAGATATATGTGGCCAATGTTCCGTACGACATGCCGTCGGATAAGCTCT
TGGCCCATTTTGCCCTGTACGGGGAGATAGAGGAGGGGCCGCTAGGCTTT
GATAAGCAGACTGGGAAGTGCAAGGGGTATGCGCTGTTTGTGTATAAGAC
TCCGGAGGGGGCTCAGGCGGCACTCGTCGATCCGGTGAAGAACATCGAGG
GGAGRCAATTGACTTGTAAATTGGCGATTGATGGGAAAAAGGGCAAGTCA
GACGGGCCGGGTCAGGGTCAAGGACCCGGGAGTGGGTCCAATACGCACGG
CGATGGGATGGGGATGGCACCACCGTCTTCGATTCCTGGGCAGTACGGCA
TCCCAGGTGGAATTGGTTCTTATGGTGGGTATACCAGTGGGCTTCAGGGC
CAGCCTCCGTTGGGTCACCATCCATTGGGTGGGCCTGGGTTGTCTGGTAT
CGGAAACCAGGTGAATTCGGGTTTGGGTGGTGGTGGCGGATATGGAGGGT
TGGGTGGGCCTTATGGTAACTATGGCGGCCCTGGGGGTTATGGTTTAGGT
GGTGCTGGTGGGCTAGGTGTTGGACTAGGTGGTGCTGGGTCGGCTGGTGG
TGGTCCGGGTGTGGGTACCGGGTCGTCTTTGTATGGATTGCCTCCGAGTT
CAGGTGGGTTACCATCTGGGAGGTATCCAGAGGGCGGGCACTACGGCCTG
TCGGCATATCAGAATCAGCACCACCAGCAAGCTGGGACRTCCCCCCATCC
AAGGGTTCCGCAAGGTGGCATGTACCCAAATGTGCCACCTTATTTCTGA
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Coding sequence (CDS) from alignment at MDC008987.283:1533..2831-

>MDP0000250519 ID=MDP0000250519; Name=MDP0000250519; organism=Malus x domestica; type=CDS; length=1299bp; location=Sequence derived from: MDC008987.283:1533..2831- (Malus x domestica
ATGGACGCAACCAAGAAGCGCAAGCTCGACGAAAACGGTRTCGTTCTAGA
CACAGATCCCTCCTCCSCTCCCAAGCTTTCCCCCGAAGATGCTCGCAGGC
TCATCGAGCGATTCACCCCCGATCAACTCCTCGACATTCTCCAGGACGCC
CTCTCCCGCCACRTCGACGTCCTCGACGCCGTCCGCTCCATCGCCGATCC
CGACGCCTCCCAGCGCAAGCTCTTCATCCGCGGCCTCGGCTGGGACACCA
CCACCGAGGGCCTCCGATCCCTCTTTTCCGCCTACGGAGAGATCGAGGAG
GCCATCGTCATCCTCGACAAAACCACCGGGAAATCCAAGGGTTATGGATT
CGTCACGTTCCGCCACGTCGACGGCGCTCTCATGGCCCTGAAAGAACCCA
GCAAGAAGATCGACGGCCGCATGACCGTCACGCAGCTCGCCTCCGCGGGG
AATTCGAACTCCAATACTGCCTCCAACAACGTCGCCGACGTATCGTTGCG
GAAGATATATGTGGCCAATGTTCCGTACGACATGCCGTCGGATAAGCTCT
TGGCCCATTTTGCCCTGTACGGGGAGATAGAGGAGGGGCCGCTAGGCTTT
GATAAGCAGACTGGGAAGTGCAAGGGGTATGCGCTGTTTGTGTATAAGAC
TCCGGAGGGGGCTCAGGCGGCACTCGTCGATCCGGTGAAGAACATCGAGG
GGAGRCAATTGACTTGTAAATTGGCGATTGATGGGAAAAAGGGCAAGTCA
GACGGGCCGGGTCAGGGTCAAGGACCCGGGAGTGGGTCCAATACGCACGG
CGATGGGATGGGGATGGCACCACCGTCTTCGATTCCTGGGCAGTACGGCA
TCCCAGGTGGAATTGGTTCTTATGGTGGGTATACCAGTGGGCTTCAGGGC
CAGCCTCCGTTGGGTCACCATCCATTGGGTGGGCCTGGGTTGTCTGGTAT
CGGAAACCAGGTGAATTCGGGTTTGGGTGGTGGTGGCGGATATGGAGGGT
TGGGTGGGCCTTATGGTAACTATGGCGGCCCTGGGGGTTATGGTTTAGGT
GGTGCTGGTGGGCTAGGTGTTGGACTAGGTGGTGCTGGGTCGGCTGGTGG
TGGTCCGGGTGTGGGTACCGGGTCGTCTTTGTATGGATTGCCTCCGAGTT
CAGGTGGGTTACCATCTGGGAGGTATCCAGAGGGCGGGCACTACGGCCTG
TCGGCATATCAGAATCAGCACCACCAGCAAGCTGGGACRTCCCCCCATCC
AAGGGTTCCGCAAGGTGGCATGTACCCAAATGTGCCACCTTATTTCTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding