MDP0000457862, MDP0000457862 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000457862
Unique NameMDP0000457862
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length1492
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000457862_exon_1MDP0000457862_exon_1Malus x domesticaCDS
MDP0000457862_exon_2MDP0000457862_exon_2Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000457862MDP0000457862Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000719Protein kinase, catalytic domainPFAMPF00069Pkinasecoord: 4..255
score: 1.9
IPR000719Protein kinase, catalytic domainPROFILEPS50011PROTEIN_KINASE_DOMcoord: 3..256
score: 40
IPR002290Serine/threonine- / dual-specificity protein kinase, catalytic domainSMARTSM00220Serine/Threonine protein kinases, catalyticcoord: 3..256
score: 8.3
IPR008271Serine/threonine-protein kinase, active sitePROSITEPS00108PROTEIN_KINASE_STcoord: 121..133
score
IPR011009Protein kinase-like domainSUPERFAMILY56112Protein kinase-like (PK-like)coord: 2..316
score: 4.6
IPR017441Protein kinase, ATP binding sitePROSITEPS00107PROTEIN_KINASE_ATPcoord: 9..32
score
IPR020635Tyrosine-protein kinase, catalytic domainSMARTSM00219Tyrosine kinase, catalytic domaincoord: 3..256
score: 2.7
NoneNo IPR availableGENE3D1.10.510.10no descriptioncoord: 111..259
score: 2.6
NoneNo IPR availableGENE3D3.30.200.20no descriptioncoord: 2..110
score: 9.9
NoneNo IPR availablePANTHERPTHR24361FAMILY NOT NAMEDcoord: 3..339
score: 2.7e
NoneNo IPR availablePANTHERPTHR24361:SF58SUBFAMILY NOT NAMEDcoord: 3..339
score: 2.7e
NoneNo IPR availableSEGsegsegcoord: 380..394
score: NAcoord: 398..407
score
NoneNo IPR availableSEGsegsegcoord: 6..25
score: NAcoord: 29..42
score
NoneNo IPR availableSEGsegsegcoord: 14..20
score
NoneNo IPR availableSEGsegsegcoord: 43..53
score: NAcoord: 55..68
score
NoneNo IPR availableSEGsegsegcoord: 2..13
score
NoneNo IPR availableSEGsegsegcoord: 11..26
score
NoneNo IPR availableSEGsegsegcoord: 24..48
score
NoneNo IPR availableSEGsegsegcoord: 46..52
score
NoneNo IPR availableSEGsegsegcoord: 164..171
score
NoneNo IPR availableSEGsegsegcoord: 118..133
score
NoneNo IPR availableSEGsegsegcoord: 20..53
score
NoneNo IPR availableSEGsegsegcoord: 13..25
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000457862 ID=MDP0000457862; Name=MDP0000457862; organism=Malus x domestica; type=mRNA; length=1492bp
ATGGATTGGACTAGGGGCCGAACCATCGGCCTCGGCTCCTCCGCCACGGT
CTCCATTGCCAAGTCACATGTCTCCGGCGAGGTTTTCGCAGTCAAGTCAG
CCAAGCTCGCACAATCCCAATTCCTCCAAAAGGAGCRAGCAATTTTGTCT
ACGTTGAGCTCTCCCCATATTGTACATTACAAAGGCCACAACATCTCAAC
TGAGAACGGCGACGTTTTGTACAATTTATTTTTAGAATACGCGCCTGGTG
GCACAATCTCCGACGCAATCCGACGGCARGGCGGGTGCCTRGAMGAGGCC
GCSATCAGSTGCTACGCGAAGCAGATTCTRCKCGGACTGCAACACCTCCA
CTCCAATCAAATCGCTCACTGCGACGTCAAGTGTCGGAACATTCTGGTCG
CGGAAAATGGCGCCAACGTGAAGCTCGCCGACTTGGGTTGYGCTCGCCTC
GTGAATTYYGATTGTGATTCGCCGATTGGTGGGACCCCKCTGTACATGGC
GCCGGAGGTGGCGCGCGGGGAGGAACAGGGGATAGCCGCCGACGTGTGGG
CTCTGGGATGCACAATAATCGAGATGGCCACCGGGCGGGCGCCGTGGAAC
GACGTTTGCGACCCGGTATCGGCGCTGTACCGAATCGGGTTTTCCGGCGA
TGCGCCGGAGATACCAAGCTCTCTCTCGCAGCAAGGCAGGGACTTTGTCG
CCAAGTGTTTGATTGGGGACCCACTGGAGAGGTGGTCGGCGGGTGAGCTT
CTGGAGCATGGATTTGTAGTCGAGGCACCCAATGATCTKCTAAGTCCCAC
CACCGTGTTGGATCGTMGTTTGTGGGAAGAGGAGGAATTTGAATCRGACC
AGATTTGGCATCCGACCCGTGAGAGCAGTGGTTCGGWTTATTCAGCTAAG
GAGAGGATCCGAAAGTTGGGTGAAGGCATTGCGGCGTCGTCTCGASAAAT
KCCCAATTGGGCTTCGGATGAAGAAAATTGGGTCACRGTTAGAAGTGACA
ACTTCAACAAACAAGATGTAGCACAACCACACACCATTTTTCCGCTTCTC
GCCGCCGGGCAGTCCAAACACKTGCCGCTGTGCCTCTTATCGCCGCCRAA
TGAGGCCAATATCTCGTCACAGTATACCAAAAGTATTTWCGACAGGCCAA
SAAATACGAATCCGGATACAAATACGGATCCTAGTAGTTGCTTGGGTTTG
GGTTTGGAGGGTTTGGGGRCTTGTGATGCAGCTAGCTTTAGCATTAGGCA
TAGTAAGAGAAAGGCTTGGATGGCCTYTAAWTGTAAMAGTTATGTATTTT
ATTCAAATCTTAATTTTGTAAACAAAAAGTTRTGGTTGYTTGTGCATGCT
TCTTGTTTTACCTTTTCTCACCATTTTTTAATACAGCAAACAAGTCTATT
GCCTTTTGAGCTTGCCCATCTTGGTGCATAACATTTTTTTGCATTTAGAC
AAAATCCGAAGATTGCGTTTGGGCACCCGCCTTGCCGTCTGA
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protein sequence of MDP0000457862

>MDP0000457862 ID=MDP0000457862; Name=MDP0000457862; organism=Malus x domestica; type=polypeptide; length=432bp
MDWTRGRTIGLGSSATVSIAKSHVSGEVFAVKSAKLAQSQFLQKEXAILS
TLSSPHIVHYKGHNISTENGDVLYNLFLEYAPGGTISDAIRRQGGCLXEA
AIXCYAKQILXGLQHLHSNQIAHCDVKCRNILVAENGANVKLADLGCARL
VNXDCDSPIGGTPLYMAPEVARGEEQGIAADVWALGCTIIEMATGRAPWN
DVCDPVSALYRIGFSGDAPEIPSSLSQQGRDFVAKCLIGDPLERWSAGEL
LEHGFVVEAPNDLLSPTTVLDRXLWEEEEFESDQIWHPTRESSGSXYSAK
ERIRKLGEGIAASSRXXPNWASDEENWVTVRSDNFNKQDVAQPHTIFPLL
AAGQSKHXPLCLLSPPNEANISSQYTKSIXDRPXNTNPDTNTDPSSCLGL
GLEGLGXCDAASFSIRHNKIRRLRLGTRLAV*
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mRNA from alignment at chr5:1145694..1147185+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000457862 ID=MDP0000457862; Name=MDP0000457862; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr5:1145694..1147185+ (Malus x domestica
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mRNA from alignment at MDC003895.180:8547..10038+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000457862 ID=MDP0000457862; Name=MDP0000457862; organism=Malus x domestica; type=mRNA; length=1492bp; location=Sequence derived from: MDC003895.180:8547..10038+ (Malus x domestica
ATGGATTGGACTAGGGGCCGAACCATCGGCCTCGGCTCCTCCGCCACGGT
CTCCATTGCCAAGTCACATGTCTCCGGCGAGGTTTTCGCAGTCAAGTCAG
CCAAGCTCGCACAATCCCAATTCCTCCAAAAGGAGCRAGCAATTTTGTCT
ACGTTGAGCTCTCCCCATATTGTACATTACAAAGGCCACAACATCTCAAC
TGAGAACGGCGACGTTTTGTACAATTTATTTTTAGAATACGCGCCTGGTG
GCACAATCTCCGACGCAATCCGACGGCARGGCGGGTGCCTRGAMGAGGCC
GCSATCAGSTGCTACGCGAAGCAGATTCTRCKCGGACTGCAACACCTCCA
CTCCAATCAAATCGCTCACTGCGACGTCAAGTGTCGGAACATTCTGGTCG
CGGAAAATGGCGCCAACGTGAAGCTCGCCGACTTGGGTTGYGCTCGCCTC
GTGAATTYYGATTGTGATTCGCCGATTGGTGGGACCCCKCTGTACATGGC
GCCGGAGGTGGCGCGCGGGGAGGAACAGGGGATAGCCGCCGACGTGTGGG
CTCTGGGATGCACAATAATCGAGATGGCCACCGGGCGGGCGCCGTGGAAC
GACGTTTGCGACCCGGTATCGGCGCTGTACCGAATCGGGTTTTCCGGCGA
TGCGCCGGAGATACCAAGCTCTCTCTCGCAGCAAGGCAGGGACTTTGTCG
CCAAGTGTTTGATTGGGGACCCACTGGAGAGGTGGTCGGCGGGTGAGCTT
CTGGAGCATGGATTTGTAGTCGAGGCACCCAATGATCTKCTAAGTCCCAC
CACCGTGTTGGATCGTMGTTTGTGGGAAGAGGAGGAATTTGAATCRGACC
AGATTTGGCATCCGACCCGTGAGAGCAGTGGTTCGGWTTATTCAGCTAAG
GAGAGGATCCGAAAGTTGGGTGAAGGCATTGCGGCGTCGTCTCGASAAAT
KCCCAATTGGGCTTCGGATGAAGAAAATTGGGTCACRGTTAGAAGTGACA
ACTTCAACAAACAAGATGTAGCACAACCACACACCATTTTTCCGCTTCTC
GCCGCCGGGCAGTCCAAACACKTGCCGCTGTGCCTCTTATCGCCGCCRAA
TGAGGCCAATATCTCGTCACAGTATACCAAAAGTATTTWCGACAGGCCAA
SAAATACGAATCCGGATACAAATACGGATCCTAGTAGTTGCTTGGGTTTG
GGTTTGGAGGGTTTGGGGRCTTGTGATGCAGCTAGCTTTAGCATTAGGCA
TAGTAAGAGAAAGGCTTGGATGGCCTYTAAWTGTAAMAGTTATGTATTTT
ATTCAAATCTTAATTTTGTAAACAAAAAGTTRTGGTTGYTTGTGCATGCT
TCTTGTTTTACCTTTTCTCACCATTTTTTAATACAGCAAACAAGTCTATT
GCCTTTTGAGCTTGCCCATCTTGGTGCATAACATTTTTTTGCATTTAGAC
AAAATCCGAAGATTGCGTTTGGGCACCCGCCTTGCCGTCTGA
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Coding sequence (CDS) from alignment at MDC003895.180:8547..10038+

>MDP0000457862 ID=MDP0000457862; Name=MDP0000457862; organism=Malus x domestica; type=CDS; length=1296bp; location=Sequence derived from: MDC003895.180:8547..10038+ (Malus x domestica
ATGGATTGGACTAGGGGCCGAACCATCGGCCTCGGCTCCTCCGCCACGGT
CTCCATTGCCAAGTCACATGTCTCCGGCGAGGTTTTCGCAGTCAAGTCAG
CCAAGCTCGCACAATCCCAATTCCTCCAAAAGGAGCRAGCAATTTTGTCT
ACGTTGAGCTCTCCCCATATTGTACATTACAAAGGCCACAACATCTCAAC
TGAGAACGGCGACGTTTTGTACAATTTATTTTTAGAATACGCGCCTGGTG
GCACAATCTCCGACGCAATCCGACGGCARGGCGGGTGCCTRGAMGAGGCC
GCSATCAGSTGCTACGCGAAGCAGATTCTRCKCGGACTGCAACACCTCCA
CTCCAATCAAATCGCTCACTGCGACGTCAAGTGTCGGAACATTCTGGTCG
CGGAAAATGGCGCCAACGTGAAGCTCGCCGACTTGGGTTGYGCTCGCCTC
GTGAATTYYGATTGTGATTCGCCGATTGGTGGGACCCCKCTGTACATGGC
GCCGGAGGTGGCGCGCGGGGAGGAACAGGGGATAGCCGCCGACGTGTGGG
CTCTGGGATGCACAATAATCGAGATGGCCACCGGGCGGGCGCCGTGGAAC
GACGTTTGCGACCCGGTATCGGCGCTGTACCGAATCGGGTTTTCCGGCGA
TGCGCCGGAGATACCAAGCTCTCTCTCGCAGCAAGGCAGGGACTTTGTCG
CCAAGTGTTTGATTGGGGACCCACTGGAGAGGTGGTCGGCGGGTGAGCTT
CTGGAGCATGGATTTGTAGTCGAGGCACCCAATGATCTKCTAAGTCCCAC
CACCGTGTTGGATCGTMGTTTGTGGGAAGAGGAGGAATTTGAATCRGACC
AGATTTGGCATCCGACCCGTGAGAGCAGTGGTTCGGWTTATTCAGCTAAG
GAGAGGATCCGAAAGTTGGGTGAAGGCATTGCGGCGTCGTCTCGASAAAT
KCCCAATTGGGCTTCGGATGAAGAAAATTGGGTCACRGTTAGAAGTGACA
ACTTCAACAAACAAGATGTAGCACAACCACACACCATTTTTCCGCTTCTC
GCCGCCGGGCAGTCCAAACACKTGCCGCTGTGCCTCTTATCGCCGCCRAA
TGAGGCCAATATCTCGTCACAGTATACCAAAAGTATTTWCGACAGGCCAA
SAAATACGAATCCGGATACAAATACGGATCCTAGTAGTTGCTTGGGTTTG
GGTTTGGAGGGTTTGGGGRCTTGTGATGCAGCTAGCTTTAGCATTAGGCA
TAACAAAATCCGAAGATTGCGTTTGGGCACCCGCCTTGCCGTCTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR002290Ser/Thr_dual-sp_kinase
IPR008271Ser/Thr_kinase_AS
IPR011009Kinase-like_dom_sf
IPR017441Protein_kinase_ATP_BS
IPR020635Tyr_kinase_cat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
GO:0004674protein serine/threonine kinase activity
GO:0004713protein tyrosine kinase activity
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation