MDP0000601282, MDP0000601282 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000601282
Unique NameMDP0000601282
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length1773
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000601282_exon_1MDP0000601282_exon_1Malus x domesticaCDS
MDP0000601282_exon_2MDP0000601282_exon_2Malus x domesticaCDS
MDP0000601282_exon_3MDP0000601282_exon_3Malus x domesticaCDS
MDP0000601282_exon_4MDP0000601282_exon_4Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000601282MDP0000601282Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 20..62
score: 8.2e-07coord: 91..148
score: 4.2
IPR000504RNA recognition motif domainSMARTSM00360RNA recognition motifcoord: 5..67
score: 0.17coord: 90..162
score: 5
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 89..169
score: 11.366coord: 1..71
score: 8
IPR012677Nucleotide-binding, alpha-beta plaitGENE3D3.30.70.330no descriptioncoord: 19..73
score: 5.6e-10coord: 86..180
score: 1.7
NoneNo IPR availablePANTHERPTHR24011FAMILY NOT NAMEDcoord: 20..210
score: 8.4
NoneNo IPR availablePANTHERPTHR24011:SF217SUBFAMILY NOT NAMEDcoord: 20..210
score: 8.4
NoneNo IPR availableSEGsegsegcoord: 69..87
score: NAcoord: 174..185
score: NAcoord: 196..211
score: NAcoord: 221..250
score
NoneNo IPR availableSUPERFAMILY54928RNA-binding domain, RBDcoord: 19..173
score: 1.6
NoneNo IPR availableSEGsegsegcoord: 60..77
score
NoneNo IPR availableSEGsegsegcoord: 23..39
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000601282 ID=MDP0000601282; Name=MDP0000601282; organism=Malus x domestica; type=mRNA; length=1773bp
ATGGTATCAGAGCCTACGGTTGTGGAGCCAATAAGCTTGTCAGCAGGAAG
GAAACAAGTTTGAACTTCCATTGAAAATAAGTAGGCCCAACATGAGCAGA
CCTCTTAGTTTCAATTACCAATGTGGAACTCCATCGAGGGCCTCTGATCC
CTCTTCTCTGCCTACGGAGAGATCGAGGAGGCCATCGTCATCCTCGACAA
AACCACCGGGAAATCCAAGGGTTATGGGTTCGTCACGTTTCGCCACGTCG
ACTGCGCTCTTATGGCCCTGAAGGAACAGAGCAAGAAGATCGACGGCCGC
ATGACCGTCACGCAGCTCGCCTCCGCGGGGAATTCGAATTCCAACACCGC
TTCTAACAATGCTGCAGACGTATCGTTGCGGAAGATATATGTGGCCAATG
TTCTGTACGACATGCCGTTGGATAAGCTCTTGGCCCATTTTGCCCTTTAC
GGGGAGATAGAAGAGGGACCGCTAGGCTTTGATAAGCAGACTGGGAAGTG
CAAGGGGTATGCACTGTTTGTGTATAAGACTCCGGAGGGGGCTCAGGCGG
CATTCGTCGATCCTGTGAAGAGCATCGAGGGGAGGCAATTGACCTGTAAA
TTGGCGATTGATGGGAAAAAGGGCAAGTCGGATGGGCCGGGTCAGGGTCA
AGGACCCGAGAGTGGGTCCAATACGCAAGGTGACGGGATGGGGATGGCAC
CACCGTCTTCGATTCCTGGGCAGTACGGCATCCCAGGTGGAATTGGTTTT
TTATGGTGGGTATACGAGTGGGCTTCAGGGCCGGCCTCCGTTGGGTCACC
ATCCATTGGGTAGGCCTGGGTCGTCTTTGTATGGATTGCCTCCGAGTTCA
GATGGGTTACCATCTGGGAGGTATCCAGAGGGTGGGGCACTACGGCCTGT
CGGCATATCAGAATTAGCACCACCAGCAAGTTGGGACATCCCCCCGTCCA
AGGGTTCCGCAAGGTGGCATGTACCCCAATGTGCCACCTTATTTCTGAGG
TATTTTCATTATTTTATCCTTTGCTATTATGTGTATAGCTTGGTGGTGTT
GGTTGAATTTCTTGGTGCCCGGTTAGAATACTTGGGTATGGTTGCTGCTT
CTTGCTTGGGTTCTTTCTTTACAAAATTTGTGCCTTAGGCTAATTGTGTA
TTGCATTTGTTTTTTCCTTTGGTTTACATGTGTGCCTAGTGTCACGGGCC
GCATGTTAAAAACAAAGAAAATGCCCAAGACATCATATATCTAAGCCCAT
GAAGCCATGTCTTCATGGAAGCTTCTGGAACGTCCCGGAGAAATCAAGAA
CGTGGCGGAGCATTCAAGATAATCTAGGGCATTCCGGAACATTCCACACA
AGTGTACATATTTAAGCCTCACCTAGAATAATCTAGATTAGGCAAGTTGT
ATCTAGAACTATGCTAGATATTTTTGGATGTAAGTAGGGGATTCTAGAAC
CCTCCATTGAGGAGGTGACTTAGGCCTATAAATAGGACGTAAGGCCATTT
GGCCAAACCATCCAAGAATTGTAAGCAATTGTAAAGTTCTCTTAACTTTC
AATACAAAGCTTCCTTTCTCCCATCTTCTAAGTGATCTTAGCATTCTCCA
AGCTATCTTAGCTTTCTTTGTGATTCGATCCGGGGAAGCGAGGCTTCGAA
GGCTTACTTAGCTTGTTCATCGAGGTATTCAAGTCTAAGTGCCGCACGGG
CGGAAGGCTTAAAGAGTCATCCCGTGACAGCTGGTATCAGAGCCWRGTTC
GTGAATCACTTGAAGGAAAGTAR
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protein sequence of MDP0000601282

>MDP0000601282 ID=MDP0000601282; Name=MDP0000601282; organism=Malus x domestica; type=polypeptide; length=329bp
MVSEPTVVEPISLSAGRKQIEEAIVILDKTTGKSKGYGFVTFRHVDCALM
ALKEQSKKIDGRMTVTQLASAGNSNSNTASNNAADVSLRKIYVANVLYDM
PLDKLLAHFALYGEIEEGPLGFDKQTGKCKGYALFVYKTPEGAQAAFVDP
VKSIEGRQLTCKLAIDGKKGKSDGPGQGQGPESGSNTQGDGMGMAPPSSI
PGQYGIPGGIGFLWWVYEWASGPASVGSPSIGPGSSLYGLPPSSDGLPSG
RYPEGGALRPVGISELAPPASWDIPPSKGSARWHRGFEGLLSLFIEVFKS
KCRTGGRLKESSRDSWYQSXVRESLEGK*
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mRNA from alignment at chr10:6866646..6868418-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000601282 ID=MDP0000601282; Name=MDP0000601282; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr10:6866646..6868418- (Malus x domestica
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mRNA from alignment at MDC012832.1252:2762..4534-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000601282 ID=MDP0000601282; Name=MDP0000601282; organism=Malus x domestica; type=mRNA; length=1773bp; location=Sequence derived from: MDC012832.1252:2762..4534- (Malus x domestica
ATGGTATCAGAGCCTACGGTTGTGGAGCCAATAAGCTTGTCAGCAGGAAG
GAAACAAGTTTGAACTTCCATTGAAAATAAGTAGGCCCAACATGAGCAGA
CCTCTTAGTTTCAATTACCAATGTGGAACTCCATCGAGGGCCTCTGATCC
CTCTTCTCTGCCTACGGAGAGATCGAGGAGGCCATCGTCATCCTCGACAA
AACCACCGGGAAATCCAAGGGTTATGGGTTCGTCACGTTTCGCCACGTCG
ACTGCGCTCTTATGGCCCTGAAGGAACAGAGCAAGAAGATCGACGGCCGC
ATGACCGTCACGCAGCTCGCCTCCGCGGGGAATTCGAATTCCAACACCGC
TTCTAACAATGCTGCAGACGTATCGTTGCGGAAGATATATGTGGCCAATG
TTCTGTACGACATGCCGTTGGATAAGCTCTTGGCCCATTTTGCCCTTTAC
GGGGAGATAGAAGAGGGACCGCTAGGCTTTGATAAGCAGACTGGGAAGTG
CAAGGGGTATGCACTGTTTGTGTATAAGACTCCGGAGGGGGCTCAGGCGG
CATTCGTCGATCCTGTGAAGAGCATCGAGGGGAGGCAATTGACCTGTAAA
TTGGCGATTGATGGGAAAAAGGGCAAGTCGGATGGGCCGGGTCAGGGTCA
AGGACCCGAGAGTGGGTCCAATACGCAAGGTGACGGGATGGGGATGGCAC
CACCGTCTTCGATTCCTGGGCAGTACGGCATCCCAGGTGGAATTGGTTTT
TTATGGTGGGTATACGAGTGGGCTTCAGGGCCGGCCTCCGTTGGGTCACC
ATCCATTGGGTAGGCCTGGGTCGTCTTTGTATGGATTGCCTCCGAGTTCA
GATGGGTTACCATCTGGGAGGTATCCAGAGGGTGGGGCACTACGGCCTGT
CGGCATATCAGAATTAGCACCACCAGCAAGTTGGGACATCCCCCCGTCCA
AGGGTTCCGCAAGGTGGCATGTACCCCAATGTGCCACCTTATTTCTGAGG
TATTTTCATTATTTTATCCTTTGCTATTATGTGTATAGCTTGGTGGTGTT
GGTTGAATTTCTTGGTGCCCGGTTAGAATACTTGGGTATGGTTGCTGCTT
CTTGCTTGGGTTCTTTCTTTACAAAATTTGTGCCTTAGGCTAATTGTGTA
TTGCATTTGTTTTTTCCTTTGGTTTACATGTGTGCCTAGTGTCACGGGCC
GCATGTTAAAAACAAAGAAAATGCCCAAGACATCATATATCTAAGCCCAT
GAAGCCATGTCTTCATGGAAGCTTCTGGAACGTCCCGGAGAAATCAAGAA
CGTGGCGGAGCATTCAAGATAATCTAGGGCATTCCGGAACATTCCACACA
AGTGTACATATTTAAGCCTCACCTAGAATAATCTAGATTAGGCAAGTTGT
ATCTAGAACTATGCTAGATATTTTTGGATGTAAGTAGGGGATTCTAGAAC
CCTCCATTGAGGAGGTGACTTAGGCCTATAAATAGGACGTAAGGCCATTT
GGCCAAACCATCCAAGAATTGTAAGCAATTGTAAAGTTCTCTTAACTTTC
AATACAAAGCTTCCTTTCTCCCATCTTCTAAGTGATCTTAGCATTCTCCA
AGCTATCTTAGCTTTCTTTGTGATTCGATCCGGGGAAGCGAGGCTTCGAA
GGCTTACTTAGCTTGTTCATCGAGGTATTCAAGTCTAAGTGCCGCACGGG
CGGAAGGCTTAAAGAGTCATCCCGTGACAGCTGGTATCAGAGCCWRGTTC
GTGAATCACTTGAAGGAAAGTAR
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Coding sequence (CDS) from alignment at MDC012832.1252:2762..4534-

>MDP0000601282 ID=MDP0000601282; Name=MDP0000601282; organism=Malus x domestica; type=CDS; length=987bp; location=Sequence derived from: MDC012832.1252:2762..4534- (Malus x domestica
ATGGTATCAGAGCCTACGGTTGTGGAGCCAATAAGCTTGTCAGCAGGAAG
GAAACAAATCGAGGAGGCCATCGTCATCCTCGACAAAACCACCGGGAAAT
CCAAGGGTTATGGGTTCGTCACGTTTCGCCACGTCGACTGCGCTCTTATG
GCCCTGAAGGAACAGAGCAAGAAGATCGACGGCCGCATGACCGTCACGCA
GCTCGCCTCCGCGGGGAATTCGAATTCCAACACCGCTTCTAACAATGCTG
CAGACGTATCGTTGCGGAAGATATATGTGGCCAATGTTCTGTACGACATG
CCGTTGGATAAGCTCTTGGCCCATTTTGCCCTTTACGGGGAGATAGAAGA
GGGACCGCTAGGCTTTGATAAGCAGACTGGGAAGTGCAAGGGGTATGCAC
TGTTTGTGTATAAGACTCCGGAGGGGGCTCAGGCGGCATTCGTCGATCCT
GTGAAGAGCATCGAGGGGAGGCAATTGACCTGTAAATTGGCGATTGATGG
GAAAAAGGGCAAGTCGGATGGGCCGGGTCAGGGTCAAGGACCCGAGAGTG
GGTCCAATACGCAAGGTGACGGGATGGGGATGGCACCACCGTCTTCGATT
CCTGGGCAGTACGGCATCCCAGGTGGAATTGGTTTTTTATGGTGGGTATA
CGAGTGGGCTTCAGGGCCGGCCTCCGTTGGGTCACCATCCATTGGGCCTG
GGTCGTCTTTGTATGGATTGCCTCCGAGTTCAGATGGGTTACCATCTGGG
AGGTATCCAGAGGGTGGGGCACTACGGCCTGTCGGCATATCAGAATTAGC
ACCACCAGCAAGTTGGGACATCCCCCCGTCCAAGGGTTCCGCAAGGTGGC
ATCGAGGCTTCGAAGGCTTACTTAGCTTGTTCATCGAGGTATTCAAGTCT
AAGTGCCGCACGGGCGGAAGGCTTAAAGAGTCATCCCGTGACAGCTGGTA
TCAGAGCCWRGTTCGTGAATCACTTGAAGGAAAGTAR
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding