MDP0000709988, MDP0000709988 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000709988
Unique NameMDP0000709988
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length1143
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000709988_exon_1MDP0000709988_exon_1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000709988MDP0000709988Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 74..141
score: 2.9e-15coord: 170..236
score: 9.1
IPR000504RNA recognition motif domainSMARTSM00360RNA recognition motifcoord: 73..145
score: 4.8e-19coord: 169..241
score: 2.6
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 72..149
score: 15.733coord: 168..249
score: 14
IPR012677Nucleotide-binding, alpha-beta plaitGENE3D3.30.70.330no descriptioncoord: 60..148
score: 6.4e-19coord: 154..250
score: 1.2
NoneNo IPR availablePANTHERPTHR24011FAMILY NOT NAMEDcoord: 65..378
score: 5e
NoneNo IPR availablePANTHERPTHR24011:SF217SUBFAMILY NOT NAMEDcoord: 65..378
score: 5e
NoneNo IPR availableSEGsegsegcoord: 152..167
score: NAcoord: 270..288
score
NoneNo IPR availableSUPERFAMILY54928RNA-binding domain, RBDcoord: 29..150
score: 8.7e-21coord: 151..264
score: 1.5
NoneNo IPR availableSEGsegsegcoord: 22..70
score: NAcoord: 76..89
score
NoneNo IPR availableSEGsegsegcoord: 55..68
score
NoneNo IPR availableSEGsegsegcoord: 41..71
score: NAcoord: 74..105
score
NoneNo IPR availableSEGsegsegcoord: 8..38
score
NoneNo IPR availableSEGsegsegcoord: 3..19
score
NoneNo IPR availableSEGsegsegcoord: 15..36
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000709988 ID=MDP0000709988; Name=MDP0000709988; organism=Malus x domestica; type=mRNA; length=1143bp
ATGGACTTCTCAAAGAAGCGCAAAACCGAGCCAAACGGCACCGYTTCGAC
TTCTCCACCTTCCCAATCCGCCTATCTAACTCCCGAAGACGCCCGGAGGC
TCCTCCAGCCCCTGACTCAGGACCAACTCATCGGCATCCTCCAAAACGCC
GTCGTTCGCCACCCCGACGTACTCGAATCCGTCCGCTCCGTCGCCGACCA
GGACTCCACCCTCCGGAAGCTCTTCATCCGTGGCCTCGGCGCCGACACCA
CCTCCGACTCCCTCCGCTCCCTCTTCTCCGCCTTCGGCGAGCTCGACGAG
GCCATCGTCATCCACGACAAGGCCACTGGAAAATCAAAAGGCTACGGCTT
CGTCACGTTCAAGCACGCCGACTCGGCCCTCCTGTCCCTTAAAGAACCGA
GCAAGAAAATCGACGGCAGAGTCACCGTCACGCAGTTCGCCTCCGCCGGA
TTAGCGACGTCGYTTAACAGCAGCAACCCCAACGCCGCTGACGTCTCGGC
CAGGAAGATTTACGTGGGGAGCGTCCCGTTTGATATCTCTTCGGACAGAC
TGTTGTCGGCTTTCTCGGCGTATGGAGAKATTGAGGAAGGGCCGCTAGGG
TTTGATAAGGTCACCGGAAAATCAAAGGGGTTTGCTTTYTTYGTGTACAA
GGCGGAGCAGGGAGCCAGGGCTGCGCTTGTTGAACCGTTGAAGAACATCG
ACGGTCATCAGGTGGCTTGCAAATTGGCGGTAGATAACAAGAAGAGCAAA
CCYGGTGGGGCACAACAAGGTACTCCTGATAATTCTGGTGTTCGGCCACC
GCAATCTTCCATGCCTCCGGGAATGTATCAGGGCSTGCCGCCTCAGACAG
GTCCTTATTCGGGTTTTCCAGGTGGGCATCAGCCGCTGCCGGTGCCTTCT
GGTAATAATTTTAGTGGTGCCAGGTATAATCCGAATTTGGGAGGTGGATA
TGGTATGCCACCGCCAGGAGAATTTGGAGCTCGATTGCCGCCAAGTTCTA
TTGGAATGGGTCCTGGAGGATACTCAGATGATCCACATTATGGTTTAGGA
TCGTCCATGGCGCATCCTTCTCAGCATCAACAGCCTCCTATGCCTCGAAT
TCCGCCTGGTGGACTGTACCAGGGCATGCCGCCTTACTACTGA
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protein sequence of MDP0000709988

>MDP0000709988 ID=MDP0000709988; Name=MDP0000709988; organism=Malus x domestica; type=polypeptide; length=381bp
MDFSKKRKTEPNGTXSTSPPSQSAYLTPEDARRLLQPLTQDQLIGILQNA
VVRHPDVLESVRSVADQDSTLRKLFIRGLGADTTSDSLRSLFSAFGELDE
AIVIHDKATGKSKGYGFVTFKHADSALLSLKEPSKKIDGRVTVTQFASAG
LATSXNSSNPNAADVSARKIYVGSVPFDISSDRLLSAFSAYGXIEEGPLG
FDKVTGKSKGFAFFVYKAEQGARAALVEPLKNIDGHQVACKLAVDNKKSK
PGGAQQGTPDNSGVRPPQSSMPPGMYQGXPPQTGPYSGFPGGHQPLPVPS
GNNFSGARYNPNLGGGYGMPPPGEFGARLPPSSIGMGPGGYSDDPHYGLG
SSMAHPSQHQQPPMPRIPPGGLYQGMPPYY*
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mRNA from alignment at chr10:27495402..27496544-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000709988 ID=MDP0000709988; Name=MDP0000709988; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr10:27495402..27496544- (Malus x domestica
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mRNA from alignment at MDC009271.511:8838..9980-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000709988 ID=MDP0000709988; Name=MDP0000709988; organism=Malus x domestica; type=mRNA; length=1143bp; location=Sequence derived from: MDC009271.511:8838..9980- (Malus x domestica
ATGGACTTCTCAAAGAAGCGCAAAACCGAGCCAAACGGCACCGYTTCGAC
TTCTCCACCTTCCCAATCCGCCTATCTAACTCCCGAAGACGCCCGGAGGC
TCCTCCAGCCCCTGACTCAGGACCAACTCATCGGCATCCTCCAAAACGCC
GTCGTTCGCCACCCCGACGTACTCGAATCCGTCCGCTCCGTCGCCGACCA
GGACTCCACCCTCCGGAAGCTCTTCATCCGTGGCCTCGGCGCCGACACCA
CCTCCGACTCCCTCCGCTCCCTCTTCTCCGCCTTCGGCGAGCTCGACGAG
GCCATCGTCATCCACGACAAGGCCACTGGAAAATCAAAAGGCTACGGCTT
CGTCACGTTCAAGCACGCCGACTCGGCCCTCCTGTCCCTTAAAGAACCGA
GCAAGAAAATCGACGGCAGAGTCACCGTCACGCAGTTCGCCTCCGCCGGA
TTAGCGACGTCGYTTAACAGCAGCAACCCCAACGCCGCTGACGTCTCGGC
CAGGAAGATTTACGTGGGGAGCGTCCCGTTTGATATCTCTTCGGACAGAC
TGTTGTCGGCTTTCTCGGCGTATGGAGAKATTGAGGAAGGGCCGCTAGGG
TTTGATAAGGTCACCGGAAAATCAAAGGGGTTTGCTTTYTTYGTGTACAA
GGCGGAGCAGGGAGCCAGGGCTGCGCTTGTTGAACCGTTGAAGAACATCG
ACGGTCATCAGGTGGCTTGCAAATTGGCGGTAGATAACAAGAAGAGCAAA
CCYGGTGGGGCACAACAAGGTACTCCTGATAATTCTGGTGTTCGGCCACC
GCAATCTTCCATGCCTCCGGGAATGTATCAGGGCSTGCCGCCTCAGACAG
GTCCTTATTCGGGTTTTCCAGGTGGGCATCAGCCGCTGCCGGTGCCTTCT
GGTAATAATTTTAGTGGTGCCAGGTATAATCCGAATTTGGGAGGTGGATA
TGGTATGCCACCGCCAGGAGAATTTGGAGCTCGATTGCCGCCAAGTTCTA
TTGGAATGGGTCCTGGAGGATACTCAGATGATCCACATTATGGTTTAGGA
TCGTCCATGGCGCATCCTTCTCAGCATCAACAGCCTCCTATGCCTCGAAT
TCCGCCTGGTGGACTGTACCAGGGCATGCCGCCTTACTACTGA
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Coding sequence (CDS) from alignment at MDC009271.511:8838..9980-

>MDP0000709988 ID=MDP0000709988; Name=MDP0000709988; organism=Malus x domestica; type=CDS; length=1143bp; location=Sequence derived from: MDC009271.511:8838..9980- (Malus x domestica
ATGGACTTCTCAAAGAAGCGCAAAACCGAGCCAAACGGCACCGYTTCGAC
TTCTCCACCTTCCCAATCCGCCTATCTAACTCCCGAAGACGCCCGGAGGC
TCCTCCAGCCCCTGACTCAGGACCAACTCATCGGCATCCTCCAAAACGCC
GTCGTTCGCCACCCCGACGTACTCGAATCCGTCCGCTCCGTCGCCGACCA
GGACTCCACCCTCCGGAAGCTCTTCATCCGTGGCCTCGGCGCCGACACCA
CCTCCGACTCCCTCCGCTCCCTCTTCTCCGCCTTCGGCGAGCTCGACGAG
GCCATCGTCATCCACGACAAGGCCACTGGAAAATCAAAAGGCTACGGCTT
CGTCACGTTCAAGCACGCCGACTCGGCCCTCCTGTCCCTTAAAGAACCGA
GCAAGAAAATCGACGGCAGAGTCACCGTCACGCAGTTCGCCTCCGCCGGA
TTAGCGACGTCGYTTAACAGCAGCAACCCCAACGCCGCTGACGTCTCGGC
CAGGAAGATTTACGTGGGGAGCGTCCCGTTTGATATCTCTTCGGACAGAC
TGTTGTCGGCTTTCTCGGCGTATGGAGAKATTGAGGAAGGGCCGCTAGGG
TTTGATAAGGTCACCGGAAAATCAAAGGGGTTTGCTTTYTTYGTGTACAA
GGCGGAGCAGGGAGCCAGGGCTGCGCTTGTTGAACCGTTGAAGAACATCG
ACGGTCATCAGGTGGCTTGCAAATTGGCGGTAGATAACAAGAAGAGCAAA
CCYGGTGGGGCACAACAAGGTACTCCTGATAATTCTGGTGTTCGGCCACC
GCAATCTTCCATGCCTCCGGGAATGTATCAGGGCSTGCCGCCTCAGACAG
GTCCTTATTCGGGTTTTCCAGGTGGGCATCAGCCGCTGCCGGTGCCTTCT
GGTAATAATTTTAGTGGTGCCAGGTATAATCCGAATTTGGGAGGTGGATA
TGGTATGCCACCGCCAGGAGAATTTGGAGCTCGATTGCCGCCAAGTTCTA
TTGGAATGGGTCCTGGAGGATACTCAGATGATCCACATTATGGTTTAGGA
TCGTCCATGGCGCATCCTTCTCAGCATCAACAGCCTCCTATGCCTCGAAT
TCCGCCTGGTGGACTGTACCAGGGCATGCCGCCTTACTACTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding