Prunus Data

Genome

• The peach genome sequence: The peach genome sequence version 1.0, was released April, 2010. It contains 28,692 putative protein coding genes.
   

Maps

• Maps available in CMap
   
  • Prunus: | Prunus bin map 2005 | TxE almond x peach F2 2004 | Myrobalan Plum x Almond-Peach hybrid 2004 | GxN almond x peach F2 2001 | Prunus Transcriptome Map | Prunus Resistance Map | RosCos map |
  • Almond: |  Almond FxT 2000 | Almond FxB F1 1998 | Almond RxD F1 2010 | Almond RxD 2010 |
  • Apricot: | Apricot GxV F1 2002 | Apricot LxL F2 2003 |
  • Cherry (Sour Cherry): | PcerasusEB | PcerasusRS |
  • Peach: | Peach AxJ 2005 | Peach PMP2 2005 | Peach peach x P. ferganesis BC1 PxF 2005 (Updated) | Peach JxF 2004 | Peach Sc x B 1998 | GuardianxNemaguard 2007 | Lovell x Nemared 2006 | NJ Pillar x KV 77119 1998 |
     
• Major Prunus genes anchored to the reference TxE map 
   
• Transcriptome Maps
  
  
  • Peach transcriptome map project page
  • View peach transcriptome map in CMap (ESTs anchored to TxE map)
     
• Physical Maps
  
  
  • Peach physical mapping project page
  • View Peach Physical Map (WebFPC/WebChrom)
  • Interactive TxE general prunus map with anchored BACs and ESTs
     

ESTs

• GDR Genbank Processed
  
  
  • EST Prunus Unigene V4 (January, 2008)
  • EST Prunus Unigene V3 (June, 2006)
  • EST Prunus Unigene V2 (December, 2005)
  • Description of Genbank Prunus cDNA libraries
  • Search Genbank Prunus ESTs
  • BLAST sequences against the Genbank Prunus ESTs or the Prunus Unigene
  • Search for Sequences with SSRs (Choose library to search, then check the "Has SSRs" box)
     
• GDR Processed Projects 
  
  
  • Clemson Almond (2794 ESTs from Developing Seed)
  • Clemson Peach (9984 ESTs from Fruit Mesocarp)
  • Clemson Peach (7085 ESTs from Shoot)
  • CRA ISF Peach (1667 ESTs from Fruit Mesocarp)
     

Funded Projects

 

• Peach Physical Mapping, Peach BAC Library Construction, Peach cDNA library generation, EST mapping, Prunus Genome Database Development (NRI PI: Albert Abbott)
• Genomic Resources to Improve Fruit Size and Quality Traits in Cherry (NRI PI: Amy Iezzoni)
• Candidate Genes for Fruit Softening in Prunus (NRI PI: Cameron Peace)
• Gender Determination, the Key to Germplasm Utilization in Strawberry: Genetic Mapping and Colinearity with Peach, the Rosaceae Model System (NRI PI: Wenhao Dai)
   

Links

• ESTree
• The European Prunus Database