Prunus persica Genome v1.0 Repeats
The Prunux persica v1.0 genome repeat files are available in GFF3 formats. Repeats were predicted using the Repbase database, LTR Finder and ReAS prediction tools. A consenus file contains repeats from all three methods.
Downloads
The consensus repeats from LTR Finder, Repbase and ReAS
Prunus_persica_v1.0_repeats_consensus.gff3.gz
Repats predicted using repeats from Rebpase
Prunus_persica_v1.0_repeats_Repbase.gff3.gz
Repeat predictions from LTR Finder
Prunus_persica_v1.0_repeats_LTR.gff3.gz
Repeat predictions from ReAS
Prunus_persica_v1.0_repeats_ReAS.gff3.gz
Scaffolds masked for repeats (hard masking with N's)
Prunus_persica_v1.0_scaffolds.hardmasked.fa.gz
Scaffolds masked for repeats (soft masking with lower-case letters)
Prunus_persica_v1.0_scaffolds.softmasked.fa.gz
