Single Nucleotide Polymorphisms (SNPs)

 

The type and frequency of single nucleotide polymorphisms (SNPs) in this unigene assembly (V4) were determined using the autoSNP program.

  Fragaria                         Malus Prunus Pyrus Rosa Rubus  
Number of Contigs 5582 23284 9179 35 1228 40
Number of SNPs 623 12949 5852 1 626 7
SNP Frequency 0.01/100 bp 0.06/100 bp 0.07/100 bp 0.00/100bp 0.08/100bp 0.03/100 bp
# Transitions 252 6859 2637 1 319 6
# Transversions 137 3659 1525 0 186 1
# Indels 234 2431 1690 0 121 0

 

 

 

 

 

 

 

 

 

 

The type and frequency of single nucleotide polymorphisms (SNPs) in this unigene assembly (V3) were determined using the autoSNP program.

                                       Fragaria                            Malus                                Prunus                          Pyrus                           Rosa                   
Number of Contigs   2939  23868  8818  35  705 
Number of SNPs  342  14298  5284  1  320 
SNP Frequency  0.01/100bp  0.07/100bp  0.07/100bp  0.00/100bp  0.07/100bp 
# Transitions  132  7060  2345  1  140 
# Transversions  85  3836  1353  0  85 
# Indels  127  3402  1586  0  95