Gene indices were obtained from The Gene Index Project (http://compbio.dfci.harvard.edu/tgi/). The following plant species gene indices were obtained: Apple (Malus domestica) v1.0 7-8-08 (MdGI), Arabidopsis thaliana v13.0 6-16-06 (AGI), Beet (Beta vulgaris) v2.0 5-19-08 (BvGI), Brassica napus v3.1 5-31-08 (BnGI), Cotton (Gossypium) v9.0 6-14-08 (CGI), Grape (Vitis vinifera) v6.0 7-30-08 VvGI), Sunflower (Helianthus annuus) v5.0 (HaGI), Lettuce (Lactuca sativa) v3.0 7-2-08 (LsGI), Medicago truncatula v9.0 v7-16-08 (MtGI), Onion (Allium cepa) v2.0 (OnGI), Orange (Citrus sinensis) v1.0 6-25-08 (CsGI), Peach (Prunus persica) v1.0 6-29-08 (PrpeGI), Pepper (Capsicum annuum) v3.0 7-17-08 (CaGI), Pinus v7.0 7-23-08 (PGI), Soybean (Glycine max) v13.0 7-11-08 (GmGI), Sugar Cane (Saccharum officinarum) v2.2 (SoGI), and Tomato (Solanum lycopersicum) v12.0 7-15-08 (LGI). Gene indices were mapped to the genome sequence scaffolds and unassembled contigs using gmap version 2007-09-28 (http://www.gene.com/share/gmap/; and Watanabe, 2005).
Downloads
| Allium cepa, onion (GFF3 file) |
fvesca_v1.0_gmap-Allium_cepa-onion.gff3
.gz
|
| Arabidopsis thaliana
(GFF3 file)
|
fvesca_v1.0_gmap-Arabidopsis_thaliana.gff3
.gz
|
| Beta_vulgaris, beet
(GFF3 file)
|
fvesca_v1.0_gmap-Beta_vulgaris-beet.gff3
.gz
|
| Brassica napus, rapeseed
(GFF3 file)
|
fvesca_v1.0_gmap-Brassica_napus-rapeseed.gff3
.gz
|
| Capsicum annuum, pepper
(GFF3 file)
|
fvesca_v1.0_gmap-Capsicum_annuum-pepper.gff3
.gz
|
| Citrus sinensis, sweet orange
(GFF3 file)
|
fvesca_v1.0_gmap-Citrus_sinensis-orange.gff3
.gz
|
| Glycene max, soybean
(GFF3 file)
|
fvesca_v1.0_gmap-Glycine_max-soybean.gff3
.gz
|
| Gossypium
(GFF3 file)
|
fvesca_v1.0_gmap-Gossypium.gff3
.gz
|
| Helianthus annus, sunflower
(GFF3 file)
|
fvesca_v1.0_gmap-Helianthus_annuus-sunflower.gff3
.gz
|
| Lactuca sativa, lettuce
(GFF3 file)
|
fvesca_v1.0_gmap-Lactuca_sativa-lettuce.gff3
.gz
|
| Malus domestica, apple
(GFF3 file)
|
fvesca_v1.0_gmap-Malus_domestica-apple.gff3
.gz
|
| Medicago truncatula
(GFF3 file)
|
fvesca_v1.0_gmap-Medicago_truncatula.gff3
.gz
|
| Pinus, pine
(GFF3 file)
|
fvesca_v1.0_gmap-Pinus-pine.gff3
.gz
|
| Prunus persica, peach
(GFF3 file)
|
fvesca_v1.0_gmap-Prunus_persica-peach.gff3
.gz
|
| Saccharum officinarum, sugarcane
(GFF3 file)
|
fvesca_v1.0_gmap-Saccharum_officinarum-sugarcane.gff3
.gz
|
| Solanum lycopersicum, tomato
(GFF3 file)
|
fvesca_v1.0_gmap-Solanum_lycopersicum-tomato.gff3
.gz
|
| Triticum aestivum, wheat
(GFF3 file)
|
fvesca_v1.0_gmap-Triticum_aestivum-wheat.gff3
.gz
|
| Vitis vinifera, grape
(GFF3 file)
|
fvesca_v1.0_gmap-Vitis_vinifera-grape.gff3.gz |
