Publication Overview
TitleConstruction of a High-Density Simple Sequence Repeat Consensus Genetic Map for Pear (Pyrus spp.)
AuthorsChen H, Song Y, Li L, Khan M, Korban S, Wu J, Zhang S
TypeJournal Article
Journal NamePlant Molecular Biology Reporter
Volume33
Issue2
Year2015
Page(s)316–325
CitationChen H, Song Y, Li L, Khan M, Korban S, Wu J, Zhang S. Construction of a High-Density Simple Sequence Repeat Consensus Genetic Map for Pear (Pyrus spp.). Plant Molecular Biology Reporter. 2015; 33(2):316–325.

Abstract

As an important fruit crop that is widely grown commercially in temperate regions of the world, pear (Pyrus) is a target for pursuing efficient breeding strategies. Construction of a reliable and dense genetic linkage map is critical for undertaking marker-assisted breeding. In this study, a population of 56 F1 seedlings of ‘Bayuehong’ × ‘Dangshansuli’ was used to construct a high-density simple sequence repeat (SSR)-based genetic linkage map. A total of 1,756 SSR markers, including 1,341 newly designed SSRs based on whole-genome sequencing of an Asiatic pear along with 415 previously reported SSRs, were first evaluated for polymorphism. Based on 894 SSRs demonstrating polymorphism, a consensus genetic map consisting of 734 loci distributed along all 17 linkage groups (LG) was constructed, with a total length of 1,661.4 cM and with an average marker interval of 2.26 cM. Comparisons among different maps of pear and apple were then made based on positions of previously mapped SSR markers on the consensus map. As a result, homologous linkage groups LG3 and LG11, LG5 and LG10, LG9 and LG17, LG13 and LG16, LG8 and LG15 have been identified. This high-density SSR map along with a set of SSR markers covering the whole genome of pear will greatly facilitate integration of independent maps, aid in pursuing comparative genome studies, and in evaluation of different germplasm in future genetic and breeding studies.
Features
This publication contains information about 437 features:
Feature NameUniquenameType
NAUpy71eNAUpy71egenetic_marker
NAUpy71fNAUpy71fgenetic_marker
NAUpy72cNAUpy72cgenetic_marker
NAUpy72mNAUpy72mgenetic_marker
NAUpy73fNAUpy73fgenetic_marker
NAUpy73vNAUpy73vgenetic_marker
NAUpy73xNAUpy73xgenetic_marker
NAUpy74aNAUpy74agenetic_marker
NAUpy74bNAUpy74bgenetic_marker
NAUpy74dNAUpy74dgenetic_marker
NAUpy74eNAUpy74egenetic_marker
NAUpy74mNAUpy74mgenetic_marker
NAUpy75dNAUpy75dgenetic_marker
NAUpy75fNAUpy75fgenetic_marker
NAUpy75nNAUpy75ngenetic_marker
NAUpy76dNAUpy76dgenetic_marker
NAUpy76fNAUpy76fgenetic_marker
NAUpy76iNAUpy76igenetic_marker
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NAUpy77mNAUpy77mgenetic_marker
NAUpy77nNAUpy77ngenetic_marker
NAUpy77sNAUpy77sgenetic_marker
NAUpy78dNAUpy78dgenetic_marker

Pages

Featuremaps
This publication contains information about 5 maps:
Map Name
Pear-BD-F1-2015
Pear-Bayuehong-F1-2015
Pear-Dangshansuli-F1-2015
Pear-Bartlett-F1-2007
Pear-La_France-F1-2007
Stocks
This publication contains information about 3 stocks:
Stock NameUniquenameType
Bayuehong_x_DangshansuliBayuehong_x_Dangshansulipopulation
DangshansuliDangshansuliaccession
BayuehongBayuehongaccession