Publication Overview
TitleConstruction of a High-Density Simple Sequence Repeat Consensus Genetic Map for Pear (Pyrus spp.)
AuthorsChen H, Song Y, Li L, Khan M, Korban S, Wu J, Zhang S
TypeJournal Article
Journal NamePlant Molecular Biology Reporter
Volume33
Issue2
Year2015
Page(s)316–325
CitationChen H, Song Y, Li L, Khan M, Korban S, Wu J, Zhang S. Construction of a High-Density Simple Sequence Repeat Consensus Genetic Map for Pear (Pyrus spp.). Plant Molecular Biology Reporter. 2015; 33(2):316–325.

Abstract

As an important fruit crop that is widely grown commercially in temperate regions of the world, pear (Pyrus) is a target for pursuing efficient breeding strategies. Construction of a reliable and dense genetic linkage map is critical for undertaking marker-assisted breeding. In this study, a population of 56 F1 seedlings of ‘Bayuehong’ × ‘Dangshansuli’ was used to construct a high-density simple sequence repeat (SSR)-based genetic linkage map. A total of 1,756 SSR markers, including 1,341 newly designed SSRs based on whole-genome sequencing of an Asiatic pear along with 415 previously reported SSRs, were first evaluated for polymorphism. Based on 894 SSRs demonstrating polymorphism, a consensus genetic map consisting of 734 loci distributed along all 17 linkage groups (LG) was constructed, with a total length of 1,661.4 cM and with an average marker interval of 2.26 cM. Comparisons among different maps of pear and apple were then made based on positions of previously mapped SSR markers on the consensus map. As a result, homologous linkage groups LG3 and LG11, LG5 and LG10, LG9 and LG17, LG13 and LG16, LG8 and LG15 have been identified. This high-density SSR map along with a set of SSR markers covering the whole genome of pear will greatly facilitate integration of independent maps, aid in pursuing comparative genome studies, and in evaluation of different germplasm in future genetic and breeding studies.
Features
This publication contains information about 437 features:
Feature NameUniquenameType
NAUpy23cNAUpy23cgenetic_marker
NAUpy23eNAUpy23egenetic_marker
NAUpy23iNAUpy23igenetic_marker
NAUpy23mNAUpy23mgenetic_marker
NAUpy24fNAUpy24fgenetic_marker
NAUpy24sNAUpy24sgenetic_marker
NAUpy24uNAUpy24ugenetic_marker
NAUpy24vNAUpy24vgenetic_marker
NAUpy25aNAUpy25agenetic_marker
NAUpy25bNAUpy25bgenetic_marker
NAUpy25cNAUpy25cgenetic_marker
NAUpy25nNAUpy25ngenetic_marker
NAUpy25rNAUpy25rgenetic_marker
NAUpy25vNAUpy25vgenetic_marker
NAUpy25xNAUpy25xgenetic_marker
NAUpy26aNAUpy26agenetic_marker
NAUpy26eNAUpy26egenetic_marker
NAUpy26kNAUpy26kgenetic_marker
NAUpy26mNAUpy26mgenetic_marker
NAUpy26rNAUpy26rgenetic_marker
NAUpy26sNAUpy26sgenetic_marker
NAUpy26tNAUpy26tgenetic_marker
NAUpy26wNAUpy26wgenetic_marker
NAUpy27bNAUpy27bgenetic_marker
NAUpy27eNAUpy27egenetic_marker

Pages

Featuremaps
This publication contains information about 5 maps:
Map Name
Pear-BD-F1-2015
Pear-Bayuehong-F1-2015
Pear-Dangshansuli-F1-2015
Pear-Bartlett-F1-2007
Pear-La_France-F1-2007
Stocks
This publication contains information about 3 stocks:
Stock NameUniquenameType
Bayuehong_x_DangshansuliBayuehong_x_Dangshansulipopulation
DangshansuliDangshansuliaccession
BayuehongBayuehongaccession