Jonathan | GDR

Germplasm Overview


Name	Jonathan
Alias	N/A
GRIN ID	PI 590185
Type	Cultivar
Species	Malus x domestica
Description	N/A
Origin Country	N/A
Origin Detail	USA
Pedigree	N/A
Maternal Parent	Esopus Spitzenburg
Paternal Parent	N/A
Maternal Parent of	Jonagold [view all 32]
Paternal Parent of	Tsugaru [view all 13]
Phenotypic Data	[view all 16]
SSR Genotype Data	[view all 34]
SNP Genotype Data	[view all 14150]
Map	[view all 6]
DNA Library	N/A
Sequence	N/A
Comments	N/A
Reference	[view all 3]

Genetic Map Data


Name	Type	PopulationType
Apple-JGD-F1-2015	genetic	F1
Apple-JGD-F1-Botcanker	genetic	F1
Apple-JGD-F1-FRR	genetic	F1
Apple-GDxJ-F1-2012	genetic	F1
Apple-JGD-F1-2014	genetic	F1
Apple-JoPr-BC-2016	genetic	BC

Qtl

Total 66 records


#	Name	Dataset
1	qFRL.JGD-J7.2008.1	Apple-fruit_shape-Cao-2015
2	qFRL.JGD-J7.2008.2	Apple-fruit_shape-Cao-2015
3	qFRL.JGD-J11.2009	Apple-fruit_shape-Cao-2015
4	qFRL.JGD-G1.2014	Apple-fruit_shape-Cao-2015
5	qFRDIA.JGD-J3.2008	Apple-fruit_shape-Cao-2015
6	qFRSH.JGD-J11.2008.1	Apple-Fruit_Length_Diameter-Han-2014
7	qFRSH.JGD-J11.2008.1	Apple-fruit_shape-Cao-2015
8	qFRSH.JGD-J11.2008.2	Apple-Fruit_Length_Diameter-Han-2014
9	qFRSH.JGD-J11.2008.2	Apple-fruit_shape-Cao-2015
10	qFRSH.JGD-J11.2008.3	Apple-Fruit_Length_Diameter-Han-2014
11	qFRSH.JGD-J11.2008.3	Apple-fruit_shape-Cao-2015
12	qFRSH.JGD-J11.2008.4	Apple-fruit_shape-Cao-2015
13	qFRSH.JGD-J11.2009.1	Apple-fruit_shape-Cao-2015
14	qFRSH.JGD-J11.2009.2	Apple-fruit_shape-Cao-2015
15	qFRSH.JGD-J5.2014	Apple-fruit_shape-Cao-2015
16	qFRSH.JGD-J11.2014.1	Apple-fruit_shape-Cao-2015
17	qFRSH.JGD-J11.2014.2	Apple-fruit_shape-Cao-2015
18	qFRSH.JGD-J11.2014.3	Apple-fruit_shape-Cao-2015
19	qFRDIA.JGD-G11.2008	Apple-Fruit_Length_Diameter-Han-2014
20	qFRDIA.JGD-G2.2008	Apple-Fruit_Length_Diameter-Han-2014
21	qFRDIA.JGD-G3.2008	Apple-Fruit_Length_Diameter-Han-2014
22	qFRDIA.JGD-G4.2009	Apple-Fruit_Length_Diameter-Han-2014
23	qFRDIA.JGD-G8.2008.1	Apple-Fruit_Length_Diameter-Han-2014
24	qFRDIA.JGD-G8.2008.2	Apple-Fruit_Length_Diameter-Han-2014
25	qFRDIA.JGD-G8.2008.3	Apple-Fruit_Length_Diameter-Han-2014

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Ssr Genotype Data

Total 34 records

Download Table

#	Dataset	Marker	Marker Type	Genotype	Marker_Allele
1	Apple_SSR_Genotype_Volk_2020	CH01f02	genetic_marker	208\|208	CH01f02_208; CH01f02_208
2	Apple_SSR_Genotype_Volk_2020	CH01f02	genetic_marker	208\|208	CH01f02_208; CH01f02_208
3	Apple_SSR_Genotype_Volk_2020	CH01H01	genetic_marker	118\|134	CH01H01_118; CH01H01_134
4	Apple_SSR_Genotype_Volk_2020	CH01H01	genetic_marker	118\|134	CH01H01_118; CH01H01_134
5	Apple_SSR_Genotype_Volk_2020	CH02d08	genetic_marker	230\|256	CH02d08_230; CH02d08_256
6	Apple_SSR_Genotype_Volk_2020	CH02d08	genetic_marker	230\|256	CH02d08_230; CH02d08_256
7	Apple_SSR_Genotype_Volk_2020	GD12	genetic_marker	155\|155	GD12_155; GD12_155
8	Apple_SSR_Genotype_Volk_2020	GD12	genetic_marker	155\|155	GD12_155; GD12_155
9	Apple_SSR_Genotype_Volk_2020	GD142	genetic_marker	141\|157	GD142_141; GD142_157
10	Apple_SSR_Genotype_Volk_2020	GD142	genetic_marker	141\|157	GD142_141; GD142_157
11	Apple_SSR_Genotype_Volk_2020	GD147	genetic_marker	135\|151	GD147_135; GD147_151
12	Apple_SSR_Genotype_Volk_2020	GD147	genetic_marker	135\|151	GD147_135; GD147_151
13	Apple_SSR_Genotype_Volk_2020	GD15	genetic_marker	146\|146	GD15_146; GD15_146
14	Apple_SSR_Genotype_Volk_2020	GD15	genetic_marker	146\|146	GD15_146; GD15_146
15	Apple_SSR_Genotype_Volk_2020	GD162	genetic_marker	218\|242	GD162_218; GD162_242
16	Apple_SSR_Genotype_Volk_2020	GD162	genetic_marker	218\|242	GD162_218; GD162_242
17	Apple_SSR_Genotype_Volk_2020	GD96	genetic_marker	179\|185	GD96_179; GD96_185
18	Apple_SSR_Genotype_Volk_2020	GD96	genetic_marker	179\|185	GD96_179; GD96_185
19	Gao_Chinese_National_Repository_Apple_2015	CH05c06	genetic_marker	122\|136	CH05c06_122; CH05c06_136
20	Gao_Chinese_National_Repository_Apple_2015	CH05e04	genetic_marker	177\|185	CH05e04_177; CH05e04_185
21	Gao_Chinese_National_Repository_Apple_2015	BGT23b	genetic_marker	199\|199	BGT23b_199; BGT23b_199
22	Gao_Chinese_National_Repository_Apple_2015	KA4b	genetic_marker	155\|159	KA4b_155; KA4b_159
23	Gao_Chinese_National_Repository_Apple_2015	CH01f03b	genetic_marker	189\|189	CH01f03b_189; CH01f03b_189
24	Gao_Chinese_National_Repository_Apple_2015	CH05h12	genetic_marker	186\|200	CH05h12_186; CH05h12_200
25	Gao_Chinese_National_Repository_Apple_2015	CH02b12	genetic_marker	143\|145	CH02b12_143; CH02b12_145

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Publications


Year	Publication
2014	Yuansheng Chang, Rui Sun, Huanhuan Sun, Yongbo Zhao, Yuepeng Han, Dongmei Chen, Yi Wang, Xinzhong Zhang, Zhenhai Han. Mapping of quantitative trait loci corroborates independent genetic control of apple size and shape. Scientia Horticulturae. 2014; 174:126–132.
2015	Ke Cao, Yuansheng Chang, Rui Sun, Fei Shen, Ting Wu, Yi Wang, Xinzhong Zhang, Zhenhai Han. Candidate gene prediction via quantitative trait locus analysis of fruit shape index traits in apple. Euphytica. 2015; 206(2):381–391.
2021	Howard, N.P., Peace, C., Silverstein, K.A.T. et al. The use of shared haplotype length information for pedigree reconstruction in asexually propagated outbreeding crops, demonstrated for apple and sweet cherry. Hortic Res 8, 202 (2021). https://doi.org/10.1038/s41438-021-00637-5

Snp Genotype Data

Total 14,150 records

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#	Dataset	Marker Name	Allele	Genotype
1	RosBREED_Apple_CRS_SNP_Genotype_2020	AFL2	T/C	A\|A
2	RosBREED_Apple_CRS_SNP_Genotype_2020	CONS61	T/C	A\|A
3	RosBREED_Apple_CRS_SNP_Genotype_2020	GDsnp00002	T/G	A\|A
4	RosBREED_Apple_CRS_SNP_Genotype_2020	GDsnp00010	T/G	A\|A
5	RosBREED_Apple_CRS_SNP_Genotype_2020	GDsnp00015	T/C	A\|B
6	RosBREED_Apple_CRS_SNP_Genotype_2020	GDsnp00022	R	A\|B
7	RosBREED_Apple_CRS_SNP_Genotype_2020	GDsnp00023	T/C	A\|B
8	RosBREED_Apple_CRS_SNP_Genotype_2020	GDsnp00030	T/C	A\|B
9	RosBREED_Apple_CRS_SNP_Genotype_2020	GDsnp00038	T/C	B\|B
10	RosBREED_Apple_CRS_SNP_Genotype_2020	GDsnp00039	A/G	A\|A
11	RosBREED_Apple_CRS_SNP_Genotype_2020	GDsnp00053	T/C	A\|B
12	RosBREED_Apple_CRS_SNP_Genotype_2020	GDsnp00062	A/C	A\|B
13	RosBREED_Apple_CRS_SNP_Genotype_2020	GDsnp00070	R	A\|A
14	RosBREED_Apple_CRS_SNP_Genotype_2020	GDsnp00076	T/G	A\|B
15	RosBREED_Apple_CRS_SNP_Genotype_2020	GDsnp00077	A/G	A\|B
16	RosBREED_Apple_CRS_SNP_Genotype_2020	GDsnp00079	A/G	A\|B
17	RosBREED_Apple_CRS_SNP_Genotype_2020	GDsnp00086	T/C	B\|B
18	RosBREED_Apple_CRS_SNP_Genotype_2020	GDsnp00087	A/G	A\|B
19	RosBREED_Apple_CRS_SNP_Genotype_2020	GDsnp00091	T/C	A\|A
20	RosBREED_Apple_CRS_SNP_Genotype_2020	GDsnp00092	T/C	A\|B
21	RosBREED_Apple_CRS_SNP_Genotype_2020	GDsnp00094	T/C	A\|B
22	RosBREED_Apple_CRS_SNP_Genotype_2020	GDsnp00098	T/C	A\|B
23	RosBREED_Apple_CRS_SNP_Genotype_2020	GDsnp00099	T/G	A\|A
24	RosBREED_Apple_CRS_SNP_Genotype_2020	GDsnp00100	T/C	A\|A
25	RosBREED_Apple_CRS_SNP_Genotype_2020	GDsnp00107	A/C	A\|B

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Last

Cross References

External references for this accession


Database	Accession
GRIN	PI 590185

Maternal Parent Of

Germplasm Name	Description	Type
Jonagold		accession
Idared		accession
Akane		accession
Blackjon		accession
Crandall		accession
DgR23T35		accession
Hatsuaki		accession
Melrose		accession
Monroe		accession
PRI 47-147		accession
Wealthy		accession
Jonathan_x_Golden Delicious-F1		population
Golden_Delicious_x_Jonathan		population
Jonathan_×_Golden_Delicious		population
JoPr		population
PRI 47-176		accession
PRI47-147		accession
Undine		accession
Wright		accession
Apfel des Paris		accession
Ceres CRAW		accession
Ceres UNIBO		accession
Faurot		accession
Meran		accession
President Boudewijn		accession
PRI 10_147		accession
PRI 1293_100		accession
Prinses Beatrix		accession
Prinses Marijke		accession
Sacramentsapple		accession
Sussapfel		accession
Winterperzikappel		accession

Phenotypic Data

Total 16 trait scores

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#	Descriptor	Value
1	Acidity_0	2.5
2	Aroma_0	0.3
3	Cn_0	42.0
4	Crisp_0	0.5
5	Firm_0	1.1
6	GrndCol_0	0.4
7	Juice_0	0.5
8	M1_N_0	140.0
9	M2_N_0	227.5
10	Mass_g_0	156.0
11	OvrColType_0	0.6
12	PercOvrCol_0	3.7
13	SkinCol_0	4.0
14	SSC_0	12.6
15	Sweet_0	3.2
16	TA_0	0.510

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Paternal Parent Of

Germplasm Name	Description	Type
Tsugaru		accession
Jonagold		accession
Florina		accession
Idared		accession
Crandall		accession
Jonamac		accession
NJ 35437		accession
PRI 855-102		accession
Wealthy		accession
Priam		accession
PRI855-102		accession
Goldjon		accession
Conrad		accession

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