HB-B | GDR

Haplotype Block Overview

Annotated Terms

Stock Haplotype

Haplotype Block Overview

Name	HB-B
Species	Prunus avium
Stock Haplotype	[view all 55]
Haplotype	[view all]

Publications


Year	Publication
2017	Cai L, Voorrips R, vandeWeg E, Peace C, Iezzoni A. Genetic structure of a QTL hotspot on chromosome 2 in sweet cherry indicates positive selection for favorable haplotypes. Mol Breeding. 2017; 37:85.

Stock Haplotype

Name	Haplotype
Summit	3 4
Lambert	2 3
Regina	2 4
Ambrunes	3 5
Lapins	2 3
Stella	2 3
Sweetheart	3 4
Van	2 4
Schneiders	4 5
Bing	2 3
Rainier	2 4
Benton	2 3
Brooks	4
Cashmere	3 4
Chelan	2 3
Chinook	2 3
Cowiche	3 4
Gil Peck	2 3
Glacier	3 4
Kiona	3 4
Newstar	3 4
NY 54	3
PMR-1	2 3
Sato Nashiki	3 4
Schmidt	4
Selah	3
Tieton	3 4
Ulster	2 3
Vic	3 4
Windsor	3 5
JJ	3 4
Dzherlo	2 4
Olympus	3 4
PC 7146-16	3 4
Kordia	4
Cristobalina	4 7
Vittoria	2 4
Emperor Francis	2
Black Republican	2 6
Krupnoplodnaya	4
Early Burlat	4
Venus	2 3
Moreau	2 4
Index	2 3
Sunburst	3 4
MIM 17	8
MIM 23	4 8
AA	3 4
Bertiolle	2 4
Napoleon	2 3
BB	2 4
CC	3 4
DD	2 3
EE	2 3
GG	3 4

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
HB-B	Sweet Cherry-QTL-HotSpot-Chr2-2017	Chr02	13.49	19.3

Projects


Project Name
Sweet_Cherry-Cai-Haplotype-2017

Haplotypes

Marker	2	3	4	5	6	7	8
RosBREED_snp_sweet_cherry_Pp2_11540955	G	A	G	G	A	G	G
RosBREED_snp_sweet_cherry_Pp2_12094115	G	G	G	G	G	A	G
RosBREED_snp_sweet_cherry_Pp2_12244944	A	A	A	G	G	G	G
RosBREED_snp_sweet_cherry_Pp2_12407490	C	A	A	A	A	C	C
RosCOS3437-187_snp_sweet_cherry_Pp2_12407957	C	C	C	C	C	A	C
RosCOS3437-232_snp_sweet_cherry_Pp2_12408002	A	G	G	G	G	A	A

Alignments

Feature Name	Type	Location	Analysis
Pp02	chromosome	Pp02:14319252..15186239.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)

Annotated Terms

The following terms have been associated with this haplotype_block:

Vocabulary: **Rosaceae Trait Ontology**
Term	Definition
MAIN:000192283	total water soluble content