HB-E | GDR

Haplotype Block Overview

Annotated Terms

Stock Haplotype

Haplotype Block Overview

Name	HB-E
Species	Prunus avium
Stock Haplotype	[view all 55]
Haplotype	[view all]

Publications


Year	Publication
2017	Cai L, Voorrips R, vandeWeg E, Peace C, Iezzoni A. Genetic structure of a QTL hotspot on chromosome 2 in sweet cherry indicates positive selection for favorable haplotypes. Mol Breeding. 2017; 37:85.

Stock Haplotype

Name	Haplotype
Summit	2
Lambert	2 6
Regina	2 3
Ambrunes	2 9
Lapins	2 3
Stella	2 3
Sweetheart	2
Van	2 3
Schneiders	2
Bing	2 3
Rainier	2 3
Benton	2 8
Brooks	2
Cashmere	2
Chelan	2 8
Chinook	2 3
Cowiche	2 7
Gil Peck	2 6
Glacier	2 7
Kiona	2 7
Newstar	2
NY 54	19 2
PMR-1	2 8
Sato Nashiki	2 3
Schmidt	10 2
Selah	2
Tieton	2 7
Ulster	2 6
Vic	2
Windsor	10 2
JJ	2
Dzherlo	2
Olympus	2
PC 7146-16	2 7
Kordia	2
Cristobalina	10 14
Vittoria	10 2
Emperor Francis	2 3
Black Republican	10 3
Krupnoplodnaya	2
Early Burlat	2 7
Venus	2
Moreau	7 8
Index	2
Sunburst	2
MIM 17	15 2
MIM 23	15 16
AA	2
Bertiolle	2 6
Napoleon	2 3
BB	2 8
CC	2
DD	2
EE	2 3
GG	2

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
HB-E	Sweet Cherry-QTL-HotSpot-Chr2-2017	Chr02	29.58	35.11

Projects


Project Name
Sweet_Cherry-Cai-Haplotype-2017

Haplotypes

Marker	2	3	6	7	8	9	10	14	15	16	19
RosBREED_snp_sweet_cherry_Pp2_15337787	G	G	A	G	A	G	G	A	G	G	A
RosBREED_snp_sweet_cherry_Pp2_15355971	A	G	G	A	G	G	G	G	A	A	G
RosBREED_snp_sweet_cherry_Pp2_15372418	A	G	A	A	A	G	G	A	A	A	A
RosBREED_snp_sweet_cherry_Pp2_15492297	G	G	A	G	A	G	A	A	A	A	A
RosBREED_snp_sweet_cherry_Pp2_15624043	A	G	G	A	G	A	A	G	A	A	G
RosBREED_snp_sweet_cherry_Pp2_15711952	A	G	G	A	G	G	A	G	A	A	A
RosBREED_snp_sweet_cherry_Pp2_15747822	G	A	A	G	A	A	G	G	G	G	G
RosBREED_snp_sweet_cherry_Pp2_15873418	G	G	G	A	G	G	G	G	A	G	G
RosBREED_snp_sweet_cherry_Pp2_15874128	G	G	G	A	G	G	G	G	A	G	G
RosBREED_snp_sweet_cherry_Pp2_15894385	G	G	A	A	G	A	G	A	A	G	G
RosBREED_snp_sweet_cherry_Pp2_15983230	G	G	A	G	G	A	G	G	G	G	G
RosBREED_snp_sweet_cherry_Pp2_16098817	A	C	C	C	C	C	C	C	C	C	C
RosBREED_snp_sweet_cherry_Pp2_16118423	A	G	G	G	G	G	G	G	G	G	G
RosBREED_snp_sweet_cherry_Pp2_16142700	G	G	A	A	A	A	A	G	A	A	A
RosBREED_snp_sweet_cherry_Pp7_12013369	G	G	A	G	A	A	A	A	G	G	A

Alignments

Feature Name	Type	Location	Analysis
Pp02	chromosome	Pp02:18732420..19719211.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)

Annotated Terms

The following terms have been associated with this haplotype_block:

Vocabulary: **Rosaceae Trait Ontology**
Term	Definition
MAIN:000201942	fruit size
MAIN:000272089	flower first date
MAIN:000192293	fruit firmness
MAIN:000192283	total water soluble content