GWAS0000730 | GDR

Annotated Terms

Genome Location

GWAS Overview


GWAS Label	GWAS0000730 [ MapViewer ]
Published Symbol	RD_2012
Trait Name	fruit ripe 100%
Trait Alias	N/A
GWAS Marker	SNP_IGA_410398
GWAS Study	Peach-fruit_quality-GWAS-Linge-2021
Genome Assembly	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
Statistical Mothod	FASTmrMLM
Experimental Model	N/A
GWAS Panel	Fresh_Market_Peach_AR_SC_TX_620
LOD	28.51
P Value	2.1587383160128E-30
R2	36.25
Unique key	3510-RD_2012SNP_IGA_41039829.6658FASTmrMLM
Effect	-14.5049
MAF	0.4228
Comments	N/A

Annotated Terms

The following terms have been associated with this GWAS:

Vocabulary: **Rosaceae Trait Ontology**
Term	Definition
MAIN:000192278	fruit ripe 100%

Genome Location


Name	Type	Location	Analysis	MapViewer
scaffold_4	supercontig	scaffold_4:10685500..10685500	Prunus persica Whole Genome v1.0 Assembly & Annotation	View
Pp04	chromosome	Pp04:10696489..10696489	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)	View

Publications


Year	Publication
2021	da Silva Linge Cassia, Cai Lichun, Fu Wanfang, Clark John, Worthington Margaret, Rawandoozi Zena, Byrne David H., Gasic Ksenija. Multi-Locus Genome-Wide Association Studies Reveal Fruit Quality Hotspots in Peach Genome. Frontiers in Plant Science 25 February 2021; https://doi.org/10.3389/fpls.2021.644799

Germplasm


Stock Name	Type
Fresh_Market_Peach_AR_SC_TX_620	panel