EPPCU1106, EPPCU1106 (genetic_marker) Prunus persica | GDR

Marker Overview

Marker Overview


Name	EPPCU1106
Genbank ID	BU041106
Type	EST-SSR
Species	Prunus persica
Source Type	EST
PCR Condition	94 C 2 min, 94 C 25 sec, 60 C 20 sec, 72 C 20 sec. 35 cycles, 72 C 5min
Primer 1	EPPCU1106.F primer: CGAAGCTGAATCGAGATTATGA
Primer 2	EPPCU1106.R primer: CCGAAACACAATACTCTTGCAT
Product Length	199
Publication	[view all]
Contact	P. Arus

Contact

Name

Details

P. Arus

First name:	Pere
Last name:	Arus
Institution:	IRTA
Address:	Institut de Recerca I Tecnologia Agroalimentaries (IRTA), Departament de Genetica Vegetal, Carretera de Cabrils s/n, 08348 Cabrils, Spain
Email:	pere.arus@irta.es

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
GDR Markers Database	2004-01-01
Alignment of genetic markers to Prunus persics v2.0	2019-04-11

Publications


Year	Publication
2005	Howad W, Yamamoto T, Dirlewanger E, Testolin R, Cosson P, Cipriani G, Monforte AJ, Georgi L, Abbott AG, Arús P. Mapping with a few plants: using selective mapping for microsatellite saturation of the Prunus reference map. 2005 Nov; 171(3):1305-1309.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Prunus Bin Map	LG4	N/A	34.1	EPPCU1106	View
2	Prunus-TE-F2-2015	4	N/A	27.3	EPPCU1106	View
3	Peach_CxEL_F1	CxEL4	N/A	39.8	EPPCU1106	View
4	Prunus-TxE-peachV2.0	LG4	N/A	34.1	EPPCU1106	View
5	Sweet Cherry-C-303xBeniyutaka-F1	Pa4	N/A	38.34	EPPCU1106	View
6	Sweet Cherry-C-303xBenikirari-F1	Pa4	N/A	36.05	EPPCU1106	View
7	Sweet Cherry-PAV_r1.0_consensus_map-F1	Pa4	N/A	76.43	EPPCU1106	View
8	Peach_Consensus_map_2018	4	N/A	37.25	EPPCU1106	View

Alignments

Feature Name	Type	Location	Analysis
scaffold_4	supercontig	scaffold_4:9586223..9588103.	Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp04	chromosome	Pp04:9597208..9599088+	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)