EPPCU2000, EPPCU2000 (genetic_marker) Prunus persica | GDR

Marker Overview

Marker Overview


Name	EPPCU2000
Genbank ID	BU042000
Type	EST-SSR
Species	Prunus persica
Source Type	EST
PCR Condition	94 C 2 min, 94 C 25 sec, 60 C 20 sec, 72 C 20 sec. 35 cycles, 72 C 5min
Primer 1	EPPCU2000.F primer: CACTTTGTTTCTCTCCTTGCTTC
Primer 2	EPPCU2000.R primer: TCCTATAGCCTTGCCTCGAC
Product Length	120
Publication	[view all]
Contact	P. Arus

Contact

Name

Details

P. Arus

First name:	Pere
Last name:	Arus
Institution:	IRTA
Address:	Institut de Recerca I Tecnologia Agroalimentaries (IRTA), Departament de Genetica Vegetal, Carretera de Cabrils s/n, 08348 Cabrils, Spain
Email:	pere.arus@irta.es

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
GDR Markers Database	2004-01-01
Alignment of genetic markers to Prunus persics v2.0	2019-04-11

Publications


Year	Publication
2005	Howad W, Yamamoto T, Dirlewanger E, Testolin R, Cosson P, Cipriani G, Monforte AJ, Georgi L, Abbott AG, Arús P. Mapping with a few plants: using selective mapping for microsatellite saturation of the Prunus reference map. 2005 Nov; 171(3):1305-1309.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Prunus Bin Map	LG4	N/A	34.1	EPPCU2000	View
2	Prunus-TE-F2-2015	4	N/A	36.9	EPPCU2000	View
3	Peach-DvsS-BC2	LG4	N/A	38	EPPCU2000	View
4	Prunus-TE-BC1-T1E	G4_T1E	N/A	37.9	EPPCU2000	View
5	Prunus-TxE-peachV2.0	LG4	N/A	42.3	EPPCU2000	View
6	Peach_Consensus_map_2018	4	N/A	48.8	EPPCU2000	View

Alignments

Feature Name	Type	Location	Analysis
scaffold_4	supercontig	scaffold_4:12467623..12469016.	Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp04	chromosome	Pp04:12478769..12480162+	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)