EPPCU5176, EPPCU5176 (genetic_marker) Prunus persica | GDR

Marker Overview

Marker Overview


Name	EPPCU5176
Genbank ID	BU045176
Type	SSR
Species	Prunus persica
Source Type	EST
PCR Condition	94 C 5 min, 94 C 1 min, 55 C 1 min, 72 C 2 min. 35 cycles, 72 C 7min
Primer 1	EPPCU5176.F primer: ATGACCACACAGAATCACCC
Primer 2	EPPCU5176.R primer: GATCCTCAGCCCGAGTCAAT
Product Length	171
Publication	[view all]
Contact	P. Arus

Contact

Name

Details

P. Arus

First name:	Pere
Last name:	Arus
Institution:	IRTA
Address:	Institut de Recerca I Tecnologia Agroalimentaries (IRTA), Departament de Genetica Vegetal, Carretera de Cabrils s/n, 08348 Cabrils, Spain
Email:	pere.arus@irta.es

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
GDR Markers Database	2004-01-01
Alignment of genetic markers to Prunus persics v2.0	2019-04-11

Publications


Year	Publication
2005	Howad W, Yamamoto T, Dirlewanger E, Testolin R, Cosson P, Cipriani G, Monforte AJ, Georgi L, Abbott AG, Arús P. Mapping with a few plants: using selective mapping for microsatellite saturation of the Prunus reference map. 2005 Nov; 171(3):1305-1309.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Peach-DG-F1-2009	G7	N/A	77.6	EPPCU5176	View
2	Peach_CxEL_F1-physical-Prunus-persicaV1.0	CxEL7	N/A	18772878	EPPCU5176	View
3	Prunus-TE-F2-2015	7	N/A	47	EPPCU5176	View
4	Prunus-TE-BC1-E	G7_E	N/A	54	EPPCU5176	View
5	Prunus Bin Map	LG7	N/A	49	EPPCU5176	View
6	Prunus-TxE-peachV2.0	LG7	N/A	49	EPPCU5176	View
7	Peach-Nectaross-F1	G7	N/A	0	EPPCU5176	View
8	Peach_Consensus_map_2018	7	N/A	50	EPPCU5176	View

Alignments

Feature Name	Type	Location	Analysis
scaffold_7	supercontig	scaffold_7:18772878..18773417.	Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp07	chromosome	Pp07:18371394..18371933+	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)