pchcms4, pchcms4 (genetic_marker) Prunus persica

Marker Overview
Namepchcms4
Genbank IDN/A
TypeSSR
SpeciesPrunus persica
GermplasmSuncrest
Source TypecDNA
Repeat Motif(CA)9
Primer 1pchcms4.F primer: CTC ACG CTA TTT CTC GG
Primer 2pchcms4.Forward Primer: CTCACGCTATTTCTCGG
Primer 3pchcms4.R primer: CCT CGA CGA AGA GCT CG
Primer 4pchcms4.Reverse Primer: CCTCGACGAAGAGCTCG
Product Length225
Publication[view all]
ContactA. Abbott
Amy Iezzoni
Maria Badenes
Contact
NameDetails
A. Abbott
First name:Albert
Last name:Abbott
Institution:Clemson University
Address:100 Jordan Hall, Dept. of Genetics and Biochemistry, Clemson University, Clemson, SC, USA 29634
Email:aalbert@clemson.edu
Phone:1-864-656-3060
Amy Iezzoni
First name:Amy
Last name:Iezzoni
Title:Professor
Institution:Michigan State University
Address:A342 PSSB, East Lansing, MI 48824
Country:USA
Email:iezzoni@msu.edu
Phone:517-355-5191 x1391
Keywords:cherry breeder
Last update:Jun 2017
Maria Badenes
First name:Maria 
Last name:Badenes
Institution:Instituto Valenciano de Investigaciones Agrarias (IVIA)
Address:Instituto Valenciano de Investigaciones Agrarias, Apartado Oficial 46113 Moncada, Valencia, Spain
Country:Spain
Email:badenes_mlu@gva.es
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
R primerpchcms4.R primerPrunus persicaprimer
F primerpchcms4.F primerPrunus persicaprimer
Forward Primerpchcms4.Forward PrimerPrunus persicaprimer
Reverse Primerpchcms4.Reverse PrimerPrunus persicaprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
resistance to plum pox virusqRPPV.LB-ch1.2Prunus armeniacaQTL
resistance to plum pox virusqRPPV.LB-ch1.5Prunus armeniacaQTL
resistance to plum pox virusqRPPV.HM-ch1.1Prunus armeniacaQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
pchcms4pchcms4Prunus persicamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
GDR Markers Database2004-01-01
Germplasm
Stock NameType
Suncrestcultivar
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Prunus Bin MapLG1N/A13.6pchcms4View
2Prunus-TE-F2G1N/A13.6pchcms4View
3Apricot-LB-F1G1N/A17.9pchcms4View
4Apricot-HM-F1G1N/A21.3pchcms4View
5Apricot-LB-F1L1N/A9.56pchcms4View
6Sweet Cherry-EFxNY-F1-2008EF1N/A30.19pchcms4View
7Apricot-LB-F1B1N/A30.8pchcms4View
8Flowering Cherry-CYxE750-F1-CY1N/A19.4pchcms4View
9Apricot-LL-F2-Lito-2011LG1N/A29.3pchcms4View
10Apricot-integrated-Goldrich-2011LG1N/A25.3pchcms4View
11Prunus-TxE-peachV2.0LG1N/A13.6pchcms4View
12Sweet Cherry-C-303xBenikirari-F1Pa1N/A34.91pchcms4View
13Sweet Cherry-PAV_r1.0_consensus_map-F1Pa1N/A67.86pchcms4View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:9510845..9510845. Prunus persica Whole Genome v1.0 Assembly & Annotation