SNP_IGA_136625, SNP_IGA_136625 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_136625
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_136625
IRSC 16K SNP array for peach:SNP_IGA_136625
TypeSNP
SNP Alleles[A/G]
SpeciesPrunus persica
Primer 1SNP_IGA_136625_LEFT_primer_0: ACTGTTGGGTACCTTTTCGCTA
Primer 2SNP_IGA_136625_RIGHT_primer_0: GCCCAACTTCACCTACATTTTC
Product Length256
Publication[view all]
ContactPere Arus
Ksenija Gasic
Contact
NameDetails
Pere Arus
First name:Pere
Last name:Arus
Title:Researcher
Institution:IRTA
Address:IRTA, Centre de Recerca en Agrigeno`mica CSIC-IRTA-UAB-UB; Campus UAB, Bellaterra (Cerdanyola del Valle`s), 08193 Barcelona, Spain
Country:Spain
Email:pere.arus@irta.cat
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Prunus-TE-F2-20152N/A2SA136625View
2Prunus-TE-BC1-T1EG2_T1EN/A2.2SA136625View
3Peach-PF-BC1-2017LG2N/A4.1SNP_IGA_136625View
4Peach-PF-F1-2017LG2N/A4SNP_IGA_136625View
5Peach-Bigtop-F1G2N/A0SNP_IGA_136625View
6Peach_Consensus_map_20182N/A5.06SNP_IGA_136625View
Sequence
>SNP_IGA_136625 ID=SNP_IGA_136625; Name=SNP_IGA_136625; organism=Prunus persica; type=genetic_marker; length=121bp
GATTGATGGTGATCTTGGTGAGCACTTTGATCTGAAATTGTCAAATGTGG
ATGTAATGCARGAGAAACTTTTGCAGTATAGTAATGAAAATCCGAATAGA
ACAGTTGTGAATCCATACATT
Alignments
Feature NameTypeLocationAnalysis
scaffold_2 supercontig scaffold_2:256013..256013. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp02 chromosome Pp02:2002076..2002076. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)