SNP_IGA_284124, SNP_IGA_284124 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_284124
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_284124
IRSC 16K SNP array for peach:SNP_IGA_284124
TypeSNP
SNP Alleles[A/C]
SpeciesPrunus persica
Primer 1SNP_IGA_284124_LEFT_primer_0: AAAGACTAGCAGAATGGATGCC
Primer 2SNP_IGA_284124_RIGHT_primer_0: TGATGAATCTATGGACACCAGC
Product Length161
Publication[view all]
ContactPere Arus
Ksenija Gasic
Contact
NameDetails
Pere Arus
First name:Pere
Last name:Arus
Title:Researcher
Institution:IRTA
Address:IRTA, Centre de Recerca en Agrigeno`mica CSIC-IRTA-UAB-UB; Campus UAB, Bellaterra (Cerdanyola del Valle`s), 08193 Barcelona, Spain
Country:Spain
Email:pere.arus@irta.cat
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Prunus-TE-F2-20152N/A36.5SA284124View
2Prunus-TE-BC1-T1EG2_T1EN/A41.3SA284124View
3Peach-DvsS-BC2LG2N/A36SNP_IGA_284124View
4Peach_Consensus_map_20182N/A53.57SNP_IGA_284124View
Sequence
>SNP_IGA_284124 ID=SNP_IGA_284124; Name=SNP_IGA_284124; organism=Prunus persica; type=genetic_marker; length=121bp
CACTGATTTAGCTGGAGATGAAGGTGTTCCGGGCTATGTTCGGTTAGTCT
CTGGCTTCATKTTCCCACAAGAAGATGGAGACAGGTCATGGATCAAGGAG
AAGCTGGTGTCCATAGATTCA
Alignments
Feature NameTypeLocationAnalysis
scaffold_2 supercontig scaffold_2:22706001..22706001. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp02 chromosome Pp02:26280837..26280837. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)