SNP_IGA_287522, SNP_IGA_287522 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_287522
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_287522
IRSC 16K SNP array for peach:SNP_IGA_287522
TypeSNP
SNP Alleles[T/C]
SpeciesPrunus persica
Primer 1SNP_IGA_287522_LEFT_primer_0: ATCTCAGACTCAGTCCAAAGGC
Primer 2SNP_IGA_287522_RIGHT_primer_0: GGGACAAAAGTTGAGGAAGTTG
Product Length181
Publication[view all]
ContactPere Arus
Ksenija Gasic
Contact
NameDetails
Pere Arus
First name:Pere
Last name:Arus
Title:Researcher
Institution:IRTA
Address:IRTA, Centre de Recerca en Agrigeno`mica CSIC-IRTA-UAB-UB; Campus UAB, Bellaterra (Cerdanyola del Valle`s), 08193 Barcelona, Spain
Country:Spain
Email:pere.arus@irta.cat
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Prunus-TE-F2-20152N/A43.4SA287522View
2Prunus-TE-BC1-T1EG2_T1EN/A45.1SA287522View
3Peach-WB-F2-2015LG2N/A56.65SNP_IGA_287522View
4Peach-PF-BC1-2017LG2N/A65.3SNP_IGA_287522View
5Peach-PF-F1-2017LG2N/A81.2SNP_IGA_287522View
6Peach_Consensus_map_20182N/A63.05SNP_IGA_287522View
Sequence
>SNP_IGA_287522 ID=SNP_IGA_287522; Name=SNP_IGA_287522; organism=Prunus persica; type=genetic_marker; length=121bp
CGACCATTTTCAGTACGCCATGTTTTGCTTGCTGGTTTTGATGTGCTTCG
GGGATAAGTTRAATGAAAACCAGATCAAACAAGTTGAGTACGTTCAGCGT
CGCTTGCTTTTGAGTTTTTGG
Alignments
Feature NameTypeLocationAnalysis
scaffold_2 supercontig scaffold_2:25112638..25112638. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp02 chromosome Pp02:28709981..28709981. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)