SNP_IGA_326457, SNP_IGA_326457 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_326457
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_326457
IRSC 16K SNP array for peach:SNP_IGA_326457
3K SeqSNP for peach:SNP_IGA_326457
TypeSNP
SNP Alleles[T/G]
SpeciesPrunus persica
Source TypeWGS
Primer 1SNP_IGA_326457_LEFT_primer_0: TTAGAAAACGAGGGCTACAAGG
Primer 2SNP_IGA_326457_RIGHT_primer_0: CTAGCCCAGCTGATCTTTTGTT
Product Length293
Publication[view all]
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
3K SeqSNP for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1peach-ZC-F23N/A31.48SNP_IGA_326457View
2Peach-V6xG-F1-V63N/A42.8SNP_IGA_326457View
3Peach-VV-F2G3N/A30SNP_IGA_326457View
4Prunus-TE-F2-20153N/A24.7SA326457View
5Peach-ZC-F2-20183N/A34.39SNP_IGA_326457View
6Peach_Consensus_map_20183N/A25.92SNP_IGA_326457View
Sequence
>SNP_IGA_326457 ID=SNP_IGA_326457; Name=SNP_IGA_326457; organism=Prunus persica; type=genetic_marker; length=121bp
CTGAACACTTTCTTAGAAAACGAGGGCTACAAGGTCTTCTTGGATATGAT
ATGCAACAGTKTGGGGCAGAGACAGCATACCACATTGACCTACATGAACA
AAACACAAATTGATATATCAG
Alignments
Feature NameTypeLocationAnalysis
scaffold_3 supercontig scaffold_3:9849666..9849666. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp03 chromosome Pp03:15586851..15586851. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)