SNP_IGA_343773, SNP_IGA_343773 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_343773
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_343773
IRSC 16K SNP array for peach:SNP_IGA_343773
3K SeqSNP for peach:SNP_IGA_343773
TypeSNP
SNP Alleles[T/C]
SpeciesPrunus persica
Primer 1SNP_IGA_343773_LEFT_primer_0: TCTGCAGCTTCATAGAGAATGC
Primer 2SNP_IGA_343773_RIGHT_primer_0: TAATCAAGCCCCCTTCTTTGTA
Product Length280
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
3K SeqSNP for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1peach-ZC-F23N/A37.6SNP_IGA_343773View
2Peach-VV-F2G3N/A34.8SNP_IGA_343773View
3Peach-PF-BC1-2017LG3N/A38.4SNP_IGA_343773View
4Peach-PF-F1-2017LG3N/A39.8SNP_IGA_343773View
5Peach-Bigtop-F1G3N/A36.8SNP_IGA_343773View
6Peach-ZC-F2-20183N/A39.13SNP_IGA_343773View
7Peach_Consensus_map_20183N/A29.62SNP_IGA_343773View
Sequence
>SNP_IGA_343773 ID=SNP_IGA_343773; Name=SNP_IGA_343773; organism=Prunus persica; type=genetic_marker; length=121bp
CTTCGCTTGCCAGAAGAATGGTCGAGCCGACGAACTCTATCTCAAATATA
AATGGCAACCYTTTGCATGCAAGTTACCTAGGTACGTAATTTTTTTTAGG
TGAAAGGGAAATTAGAGTTTC
Alignments
Feature NameTypeLocationAnalysis
scaffold_3 supercontig scaffold_3:13418883..13418883. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp03 chromosome Pp03:18762121..18762121. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)