SNP_IGA_378805, SNP_IGA_378805 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_378805
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_378805
IRSC 16K SNP array for peach:SNP_IGA_378805
3K SeqSNP for peach:SNP_IGA_378805
TypeSNP
SNP Alleles[A/C]
SpeciesPrunus persica
Primer 1SNP_IGA_378805_LEFT_primer_0: CAAAAACCTCAACACCCTTCTC
Primer 2SNP_IGA_378805_RIGHT_primer_0: CGTGAGAGCATATCTGGAGTTG
Product Length184
ContactKsenija Gasic
Associated WithGWAS0000229
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
3K SeqSNP for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach-RosBREED-4K-20194N/A5.38SNP_IGA_378805View
Sequence
>SNP_IGA_378805 ID=SNP_IGA_378805; Name=SNP_IGA_378805; organism=Prunus persica; type=genetic_marker; length=121bp
CTCTAATGAAAACGGTAACGGCTATGGCTTTTACAATTCCTCGTATGGCC
AGAACTCAGAMGACCAAGTTTACGCAATCGGACTCTGCAGAGGAGATGTC
AAGGCAGAGGATTGCCGCAGT
Alignments
Feature NameTypeLocationAnalysis
scaffold_4 supercontig scaffold_4:1344674..1344674. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp04 chromosome Pp04:1344776..1344776. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
Annotated Terms
The following terms have been associated with this genetic_marker:
Vocabulary: Rosaceae Trait Ontology
TermDefinition
28:percent blushskin blush coverage