SNP_IGA_401886, SNP_IGA_401886 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_401886
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_401886
IRSC 16K SNP array for peach:SNP_IGA_401886
3K SeqSNP for peach:SNP_IGA_401886
TypeSNP
SNP Alleles[T/C]
SpeciesPrunus persica
Primer 1SNP_IGA_401886_LEFT_primer_0: TAAGGTTTTAGCCCATCGTCAT
Primer 2SNP_IGA_401886_RIGHT_primer_0: TATTTACCAGCTGGAGGAGGAG
Product Length238
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
3K SeqSNP for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach-VV-F2G4N/A23.4SNP_IGA_401886View
2Peach_CxEL_F1-physical-Prunus-persicaV1.0CxEL4N/A8222657SNP_IGA_401886View
3Peach-PF-BC1-2017LG4N/A29.9SNP_IGA_401886View
4Peach-PF-F1-2017LG4N/A36.2SNP_IGA_401886View
5Peach-Armking-F1G4N/A25.2SNP_IGA_401886View
6Peach-Nectaross-F1G4N/A12.4SNP_IGA_401886View
7Peach_Consensus_map_20184N/A33.91SNP_IGA_401886View
Sequence
>SNP_IGA_401886 ID=SNP_IGA_401886; Name=SNP_IGA_401886; organism=Prunus persica; type=genetic_marker; length=121bp
TCTTATGCTTTCATCTAAGGTCACTTGAAAACGATGACATGGCAAAACAG
AAATAAAGCTRTCATTGAGGGTCGTTATTGTGCACAAGATGTGATTTTTA
ACAGAGCCCATCACTTGGCTG
Alignments
Feature NameTypeLocationAnalysis
scaffold_4 supercontig scaffold_4:8222657..8222657. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp04 chromosome Pp04:8233517..8233517. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)