SNP_IGA_405949, SNP_IGA_405949 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_405949
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_405949
IRSC 16K SNP array for peach:SNP_IGA_405949
TypeSNP
SNP Alleles[T/G]
SpeciesPrunus persica
Primer 1SNP_IGA_405949_LEFT_primer_0: GTACCTTGGCATACACACTCCA
Primer 2SNP_IGA_405949_RIGHT_primer_0: TTGTTGTATGTCAGCAAAACCC
Product Length175
Publication[view all]
ContactPere Arus
Ksenija Gasic
Contact
NameDetails
Pere Arus
First name:Pere
Last name:Arus
Title:Researcher
Institution:IRTA
Address:IRTA, Centre de Recerca en Agrigeno`mica CSIC-IRTA-UAB-UB; Campus UAB, Bellaterra (Cerdanyola del Valle`s), 08193 Barcelona, Spain
Country:Spain
Email:pere.arus@irta.cat
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach-VV-F2G4N/A29.3SNP_IGA_405949View
2Prunus-TE-BC1-EG4_EN/A44SA405949View
3Peach-WB-F2-2015LG4N/A29.91SNP_IGA_405949View
4Peach-PF-BC1-2017LG4N/A34SNP_IGA_405949View
5Peach-PF-F1-2017LG4N/A39.9SNP_IGA_405949View
6Peach_Consensus_map_20184N/A38.78SNP_IGA_405949View
Sequence
>SNP_IGA_405949 ID=SNP_IGA_405949; Name=SNP_IGA_405949; organism=Prunus persica; type=genetic_marker; length=121bp
GCAAATCTGTGAGGTGAGGACCGTGAGCAGCCCTAGGGCTAATTGCAATG
AACACTTTGAMTTCGAGAGAGCTAGGGTTTTGCTGACATACAACAATGGT
GTCAAGTCCATGGCTCGATAT
Alignments
Feature NameTypeLocationAnalysis
scaffold_4 supercontig scaffold_4:9690588..9690588. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp04 chromosome Pp04:9701574..9701574. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)