SNP_IGA_438108, SNP_IGA_438108 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_438108
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_438108
IRSC 16K SNP array for peach:SNP_IGA_438108
TypeSNP
SNP Alleles[A/C]
SpeciesPrunus persica
Primer 1SNP_IGA_438108_LEFT_primer_0: AAGATGCCACACAAGATGTCAC
Primer 2SNP_IGA_438108_RIGHT_primer_0: ATCTCAGCCATCCATCTGTTTT
Product Length281
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
SNP_IGA_438108_LEFT_primer_0SNP_IGA_438108_LEFT_primer_0Prunus persicaprimer
SNP_IGA_438108_RIGHT_primer_0SNP_IGA_438108_RIGHT_primer_0Prunus persicaprimer


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
SNP_IGA_438108SNP_IGA_438108Prunus persicamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Sequence
>SNP_IGA_438108 ID=SNP_IGA_438108|Name=SNP_IGA_438108|organism=Prunus persica|type=genetic_marker|length=121bp
GATGTCACCTTGCTTTGTGAATCCGTCAGAAAACAAAATTTATTGGCTCC
CTTTCATGCCMTCCTTGCAAAACTCAACAATGATGCCATATCAACATCCA
GTAATCCTCCTGTTGTAGAAT
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach-VV-F2G4N/A45.6SNP_IGA_438108View
2Peach-BO-F1LG4_BN/A48.3SNP_IGA_438108View
3Peach-PF-Recurrent-2017LG4N/A38SNP_IGA_438108View
Alignments
Feature NameTypeLocationAnalysis
scaffold_4 supercontig scaffold_4:17369816..17369816. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp04 chromosome Pp04:15458276..15458276. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)