SNP_IGA_513232, SNP_IGA_513232 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_513232
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_513232
IRSC 16K SNP array for peach:SNP_IGA_513232
TypeSNP
SNP Alleles[A/G]
SpeciesPrunus persica
Primer 1SNP_IGA_513232_LEFT_primer_0: TCTAAGAAGCATGATTGGAGCA
Primer 2SNP_IGA_513232_RIGHT_primer_0: AACTTGGAGGATTACATGGTGG
Product Length242
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach-OC-F24N/A44.4SNP_IGA_513232View
2Peach-VV-F2G4N/A53.2SNP_IGA_513232View
3Peach-WB-F2-2015LG4N/A59.34SNP_IGA_513232View
4Peach-BO-F1LG4_BN/A54.1SNP_IGA_513232View
5Peach-PF-BC1-2017LG4N/A66SNP_IGA_513232View
6Peach-PF-F1-2017LG4N/A71.8SNP_IGA_513232View
7Prunus-TE-F2-20154N/A50.2SA513232View
8Peach_Consensus_map_20184N/A60.2SNP_IGA_513232View
Sequence
>SNP_IGA_513232 ID=SNP_IGA_513232; Name=SNP_IGA_513232; organism=Prunus persica; type=genetic_marker; length=121bp
GAAACATATTGATCATCTTTTCATTCAACATGTCGACATCTTCATTTGTA
GGACTTATCAYTGCCCTTTCCACCATGTAATCCTCCAAGTTTGGGAAAAC
TTGATAAATAAATTCATTGAT
Alignments
Feature NameTypeLocationAnalysis
scaffold_4 supercontig scaffold_4:26215428..26215428. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp04 chromosome Pp04:22612776..22612776. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)