SNP_IGA_551853, SNP_IGA_551853 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_551853
dbSNP IDN/A
SNP Array ID
IRSC 16K SNP array for peach:SNP_IGA_551853
IRSC 9K SNP array for peach:SNP_IGA_551853
TypeSNP
SNP Alleles[T/G]
SpeciesPrunus persica
Primer 1SNP_IGA_551853_LEFT_primer_0: AAGTACACTTGCAGGGGAGGTA
Primer 2SNP_IGA_551853_RIGHT_primer_0: CCAAGAAGTTGGAAGGAGTCAC
Product Length279
ContactKsenija Gasic
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
SNP_IGA_551853_LEFT_primer_0SNP_IGA_551853_LEFT_primer_0Prunus persicaprimer
SNP_IGA_551853_RIGHT_primer_0SNP_IGA_551853_RIGHT_primer_0Prunus persicaprimer


This genetic_marker is located in the following QTL feature(s):

Feature NameUnique NameSpeciesType
days to maturityqDMAT.B(AN)-G5.2013.BigtopPrunus persicaQTL
days to maturityqDMAT.B(AN)-G5.2014.BigtopPrunus persicaQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
SNP_IGA_551853SNP_IGA_551853Prunus persicamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Sequence
>SNP_IGA_551853 ID=SNP_IGA_551853|Name=SNP_IGA_551853|organism=Prunus persica|type=genetic_marker|length=121bp
TACACTTGCAGGGGAGGTAGAAAACCCAAAGAAAACTCTACCGAAGGCTC
TGTTTTGTGCMTTGATTTTGGTTGTTGTTGGGTATTTGTTCCCTCTTCTA
ACTGGTACCGGGGCTGTTCCC
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach-MR028-F1LG5_R028N/A4.6SNP_IGA_551853View
2Peach-PF-BC1-2017LG5N/A5.8SNP_IGA_551853View
3Peach-PF-F1-2017LG5N/A5.6SNP_IGA_551853View
4Peach-Bigtop-F1G5N/A7.2SNP_IGA_551853View
Alignments
Feature NameTypeLocationAnalysis
scaffold_5 supercontig scaffold_5:2180916..2180916. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp05 chromosome Pp05:2180900..2180900. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding