SNP_IGA_552247, SNP_IGA_552247 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_552247
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_552247
IRSC 16K SNP array for peach:SNP_IGA_552247
TypeSNP
SNP Alleles[T/C]
SpeciesPrunus persica
Primer 1SNP_IGA_552247_LEFT_primer_0: GTTGATAACCACTCCGTGCATA
Primer 2SNP_IGA_552247_RIGHT_primer_0: TGGTCTGAAGAAAATGGTCCTT
Product Length260
ContactKsenija Gasic
Associated WithGWAS0001129
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach-PF-BC1-2017LG5N/A5.8SNP_IGA_552247View
2Peach-PF-F1-2017LG5N/A5.6SNP_IGA_552247View
3Peach-RosBREED-4K-20195N/A8.96SNP_IGA_552247View
Sequence
>SNP_IGA_552247 ID=SNP_IGA_552247; Name=SNP_IGA_552247; organism=Prunus persica; type=genetic_marker; length=121bp
AATCAAATCCATCAATCTGCCATGAAACCCAATTTGCATAGCATGCCTTC
CAAAAAGCTCYACTCAACCAAATCATAAGCCTTTGACATATCCAATTTAA
GGACCATTTTCTTCAGACCAC
Alignments
Feature NameTypeLocationAnalysis
scaffold_5 supercontig scaffold_5:2240240..2240240. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp05 chromosome Pp05:2240224..2240224. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
Annotated Terms
The following terms have been associated with this genetic_marker:
Vocabulary: Rosaceae Trait Ontology
TermDefinition
MAIN:000192278fruit ripe 100%
MAIN:000192283total water soluble content