SNP_IGA_6400, SNP_IGA_6400 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_6400
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:SNP_IGA_6400
IRSC 16K SNP array for peach:SNP_IGA_6400
TypeSNP
SNP Alleles[A/G]
SpeciesPrunus persica
Primer 1SNP_IGA_6400_LEFT_primer_0: ACGACACCGTTCTCAAAAAGTT
Primer 2SNP_IGA_6400_RIGHT_primer_0: ACATGTATCCCGCAAAGCTAGT
Product Length217
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach-VV-F2G1N/A4.7SNP_IGA_6400View
2Prunus-TE-F2-20151N/A1.2SA6400View
3Peach_Consensus_map_20181N/A5.1SNP_IGA_6400View
Sequence
>SNP_IGA_6400 ID=SNP_IGA_6400; Name=SNP_IGA_6400; organism=Prunus persica; type=genetic_marker; length=121bp
ATGGCGCCAACTACTTCAGCAAGCTCTGCAACGACACCGTTCTCAAAAAG
TTCTACTATGRTGAACTCTGCGCTCAAGTGAAAATGCATTACCAGATTAA
ATGGTACAGGTGGCTTGAAAA
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:2104561..2104561. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:2104418..2104418. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)