snp_scaffold_3_254691, snp_scaffold_3_254691 (genetic_marker) Prunus persica

Marker Overview
Namesnp_scaffold_3_254691
dbSNP IDN/A
SNP Array ID
IRSC 9K SNP array for peach:snp_scaffold_3_254691
IRSC 16K SNP array for peach:snp_scaffold_3_254691
3K SeqSNP for peach:snp_scaffold_3_254691
TypeSNP
SNP Alleles[A/G]
SpeciesPrunus persica
Primer 1snp_scaffold_3_254691_LEFT_primer_0: AGTAGCCCACTGGATATGGAGA
Primer 2snp_scaffold_3_254691_RIGHT_primer_0: AAGTCCCTGAAGATGGAAGACA
Product Length174
Publication[view all]
ContactPere Arus
Ksenija Gasic
Contact
NameDetails
Pere Arus
First name:Pere
Last name:Arus
Title:Researcher
Institution:IRTA
Address:IRTA, Centre de Recerca en Agrigeno`mica CSIC-IRTA-UAB-UB; Campus UAB, Bellaterra (Cerdanyola del Valle`s), 08193 Barcelona, Spain
Country:Spain
Email:pere.arus@irta.cat
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Libraries
Library NameType
IRSC 9K SNP array for peachSNP_chip
IRSC 16K SNP array for peachSNP_chip
3K SeqSNP for peachSNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2015-01-15
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Prunus-TE-F2-20153N/A0SSC3_254691View
2Prunus-TE-BC1-EG3_EN/A1.1SSC3_254691View
3Peach_Consensus_map_20183N/A2.9snp_scaffold_3_254691View
Sequence
>snp_scaffold_3_254691 ID=snp_scaffold_3_254691; Name=snp_scaffold_3_254691; organism=Prunus persica; type=genetic_marker; length=201bp
ACAGGAATAAAGAATGTTAAGAATATCAAGAGGCATCATACGTAGAGAGA
TTTCATTCTTTTACTTACTCAGTACGCAATATTGTGAGAAAATCTGATGG
YAAGGATTCCATAAATGAAGATATGTCTTCCATCTTCAGGGACTTCAGCT
CCTGCTTTAGATTACGTCTTTCTTCAACTGACATTGCCTTCCCAAGAGCC
G
Alignments
Feature NameTypeLocationAnalysis
scaffold_3 supercontig scaffold_3:254691..254691. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp03 chromosome Pp03:1116529..1116529. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)