RosCOS1546-059_snp_sweet_cherry_Pp4_12987703, RosCOS1546-059_snp_sweet_cherry_Pp4_12987703 (genetic_marker) Prunus avium

Marker Overview
NameRosCOS1546-059_snp_sweet_cherry_Pp4_12987703
AliasRosCOS1546-059_snp_sweet_4_12987703
ss490559147
rs271790310
R1546-059_4_12987703
dbSNP IDss490559147
SNP Array ID
IRSC 6K SNP array for cherry:RosCOS1546-059_snp_sweet_cherry_Pp4_12987703
TypeSNP
SNP AllelesA/G
SpeciesPrunus avium
Publication[view all]
Associated WithROSC_FMLY_CSA1_1546
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

This genetic_marker is associated with the following contig feature(s):

Feature NameUnique NameSpeciesType
ROSC_FMLY_CSA1_1546ROSC_FMLY_CSA1_1546Rosaceae Family Genera sp.contig


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
R1546-059_4_12987703R1546-059_4_12987703Prunus aviummarker_locus
RosCOS1546-059_snp_sweet_cherry_Pp4_12987703RosCOS1546-059_snp_sweet_cherry_Pp4_12987703Prunus aviummarker_locus
ss490559147ss490559147Prunus aviummarker_locus
RosCOS1546-059_snp_sweet_cherry_Pp4_12987703RosCOS1546-059_snp_sweet_cherry_Pp4_12987703-35.68Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-04-14Pav-HB-04-14Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-04-14_2Prunus aviumhaplotype
3Pav-HB-04-14_3Prunus aviumhaplotype
4Pav-HB-04-14_4Prunus aviumhaplotype
5Pav-HB-04-14_5Prunus aviumhaplotype
6Pav-HB-04-14_6Prunus aviumhaplotype
7Pav-HB-04-14_7Prunus aviumhaplotype
8Pav-HB-04-14_8Prunus aviumhaplotype
9Pav-HB-04-14_9Prunus aviumhaplotype
10Pav-HB-04-14_10Prunus aviumhaplotype
11Pav-HB-04-14_11Prunus aviumhaplotype
12Pav-HB-04-14_12Prunus aviumhaplotype
13Pav-HB-04-14_13Prunus aviumhaplotype
14Pav-HB-04-14_14Prunus aviumhaplotype
15Pav-HB-04-14_15Prunus aviumhaplotype
16Pav-HB-04-14_16Prunus aviumhaplotype
17Pav-HB-04-14_17Prunus aviumhaplotype
18Pav-HB-04-14_18Prunus aviumhaplotype
19Pav-HB-04-14_19Prunus aviumhaplotype
20Pav-HB-04-14_20Prunus aviumhaplotype
21Pav-HB-04-14_21Prunus aviumhaplotype
22Pav-HB-04-14_22Prunus aviumhaplotype
23Pav-HB-04-14_23Prunus aviumhaplotype
24Pav-HB-04-14_24Prunus aviumhaplotype
25Pav-HB-04-14_25Prunus aviumhaplotype
26Pav-HB-04-14_26Prunus aviumhaplotype
27Pav-HB-04-14_27Prunus aviumhaplotype
28Pav-HB-04-14_28Prunus aviumhaplotype
29Pav-HB-04-14_29Prunus aviumhaplotype
30Pav-HB-04-14_30Prunus aviumhaplotype
31Pav-HB-04-14_31Prunus aviumhaplotype
32Pav-HB-04-14_32Prunus aviumhaplotype
33Pav-HB-04-14_33Prunus aviumhaplotype
34Pav-HB-04-14_34Prunus aviumhaplotype
35Pav-HB-04-14_35Prunus aviumhaplotype
36Pav-HB-04-14_36Prunus aviumhaplotype
37Pav-HB-04-14_37Prunus aviumhaplotype
38Pav-HB-04-14_38Prunus aviumhaplotype
39Pav-HB-04-14_39Prunus aviumhaplotype
40Pav-HB-04-14_40Prunus aviumhaplotype
41Pav-HB-04-14_41Prunus aviumhaplotype
42Pav-HB-04-14_42Prunus aviumhaplotype
43Pav-HB-04-14_43Prunus aviumhaplotype
44Pav-HB-04-14_44Prunus aviumhaplotype
45Pav-HB-04-14_45Prunus aviumhaplotype
46Pav-HB-04-14_46Prunus aviumhaplotype
47Pav-HB-04-14_47Prunus aviumhaplotype
48Pav-HB-04-14_48Prunus aviumhaplotype
49Pav-HB-04-14_49Prunus aviumhaplotype
50Pav-HB-04-14_50Prunus aviumhaplotype
51Pav-HB-04-14_51Prunus aviumhaplotype
52Pav-HB-04-14_52Prunus aviumhaplotype
53Pav-HB-04-14_53Prunus aviumhaplotype
54Pav-HB-04-14_54Prunus aviumhaplotype
55Pav-HB-04-14_55Prunus aviumhaplotype
56Pav-HB-04-14_56Prunus aviumhaplotype
57Pav-HB-04-14_57Prunus aviumhaplotype
58Pav-HB-04-14_58Prunus aviumhaplotype
59Pav-HB-04-14_59Prunus aviumhaplotype
60Pav-HB-04-14_60Prunus aviumhaplotype
61Pav-HB-04-14_61Prunus aviumhaplotype
62Pav-HB-04-14_62Prunus aviumhaplotype
63Pav-HB-04-14_63Prunus aviumhaplotype
64Pav-HB-04-14_64Prunus aviumhaplotype
65Pav-HB-04-14_65Prunus aviumhaplotype
66Pav-HB-04-14_66Prunus aviumhaplotype
67Pav-HB-04-14_67Prunus aviumhaplotype
68Pav-HB-04-14_68Prunus aviumhaplotype
69Pav-HB-04-14_69Prunus aviumhaplotype
70Pav-HB-04-14_70Prunus aviumhaplotype
71Pav-HB-04-14_71Prunus aviumhaplotype
72Pav-HB-04-14_72Prunus aviumhaplotype
73Pav-HB-04-14_73Prunus aviumhaplotype
74Pav-HB-04-14_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RL-F1-2015L4N/A40.89R1546-059_4_12987703View
2Prunus-TE-6K cherry SNP-estimate4N/A43RosCOS1546-059_snp_sweet_cherry_Pp4_12987703View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate4N/A39.4RosCOS1546-059_snp_sweet_cherry_Pp4_12987703View
4Sweet Cherry-VxC-F1LG4N/A57.6RosCOS1546-059_snp_sweet_cherry_Pp4_12987703View
5Sweet Cherry-CxC-F2LG4N/A59.05RosCOS1546-059_snp_sweet_cherry_Pp4_12987703View
6Sweet Cherry-BCxBC-F2LG4N/A53.17RosCOS1546-059_snp_sweet_cherry_Pp4_12987703View
7Sweet Cherry-RosBREED-1.6K-20194N/A35.68RosCOS1546-059_snp_sweet_cherry_Pp4_12987703View
8Sweet Cherry-RosBREED-3.8K-20204N/A36.01RosCOS1546-059_snp_sweet_cherry_Pp4_12987703View
9Sweet Cherry-VxC-F1-6+9K_array4N/A57.89RosCOS1546-059_snp_sweet_cherry_Pp4_12987703View
10Sweet Cherry-BTK-F1-2013LG04N/A57.7ss490559147View
11Sweet Cherry-RL-F1-2013LG04N/A35.7ss490559147View
12Sour Cherry-M172x25-F1LG4N/A35.68RosCOS1546-059_snp_sweet_cherry_Pp4_12987703View
13SourCherry-Montx25-F1LG4N/A35.68RosCOS1546-059_snp_sweet_cherry_Pp4_12987703View
14SourCherry-25x25-F1LG4N/A35.68RosCOS1546-059_snp_sweet_cherry_Pp4_12987703View
15Sour Cherry-US-F1LG4N/A35.68RosCOS1546-059_snp_sweet_cherry_Pp4_12987703View
16SourCherry-RE-F1LG4N/A35.68RosCOS1546-059_snp_sweet_cherry_Pp4_12987703View
Alignments
Feature NameTypeLocationAnalysis
scaffold_4 supercontig scaffold_4:12987703..12987703. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp04 chromosome Pp04:12998500..12998500. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr4 chromosome PAV_r1.0chr4:15766151..15766151. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)