RosBREED_snp_sweet_cherry_Pp1_24575772, RosBREED_snp_sweet_cherry_Pp1_24575772 (genetic_marker) Prunus avium

Marker Overview
NameRosBREED_snp_sweet_cherry_Pp1_24575772
AliasRosBREED_snp_sweet_1_24575772
ss490546874
rs271786609
Rsweet_1_24575772
dbSNP IDss490546874
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_sweet_cherry_Pp1_24575772
TypeSNP
SNP AllelesA/C
SpeciesPrunus avium
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rsweet_1_24575772Rsweet_1_24575772Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp1_24575772RosBREED_snp_sweet_cherry_Pp1_24575772Prunus aviummarker_locus
ss490546874ss490546874Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp1_24575772RosBREED_snp_sweet_cherry_Pp1_24575772-65.34Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-01-20Pav-HB-01-20Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-01-20_2Prunus aviumhaplotype
3Pav-HB-01-20_3Prunus aviumhaplotype
4Pav-HB-01-20_4Prunus aviumhaplotype
5Pav-HB-01-20_5Prunus aviumhaplotype
6Pav-HB-01-20_6Prunus aviumhaplotype
7Pav-HB-01-20_7Prunus aviumhaplotype
8Pav-HB-01-20_8Prunus aviumhaplotype
9Pav-HB-01-20_9Prunus aviumhaplotype
10Pav-HB-01-20_10Prunus aviumhaplotype
11Pav-HB-01-20_11Prunus aviumhaplotype
12Pav-HB-01-20_12Prunus aviumhaplotype
13Pav-HB-01-20_13Prunus aviumhaplotype
14Pav-HB-01-20_14Prunus aviumhaplotype
15Pav-HB-01-20_15Prunus aviumhaplotype
16Pav-HB-01-20_16Prunus aviumhaplotype
17Pav-HB-01-20_17Prunus aviumhaplotype
18Pav-HB-01-20_18Prunus aviumhaplotype
19Pav-HB-01-20_19Prunus aviumhaplotype
20Pav-HB-01-20_20Prunus aviumhaplotype
21Pav-HB-01-20_21Prunus aviumhaplotype
22Pav-HB-01-20_22Prunus aviumhaplotype
23Pav-HB-01-20_23Prunus aviumhaplotype
24Pav-HB-01-20_24Prunus aviumhaplotype
25Pav-HB-01-20_25Prunus aviumhaplotype
26Pav-HB-01-20_26Prunus aviumhaplotype
27Pav-HB-01-20_27Prunus aviumhaplotype
28Pav-HB-01-20_28Prunus aviumhaplotype
29Pav-HB-01-20_29Prunus aviumhaplotype
30Pav-HB-01-20_30Prunus aviumhaplotype
31Pav-HB-01-20_31Prunus aviumhaplotype
32Pav-HB-01-20_32Prunus aviumhaplotype
33Pav-HB-01-20_33Prunus aviumhaplotype
34Pav-HB-01-20_34Prunus aviumhaplotype
35Pav-HB-01-20_35Prunus aviumhaplotype
36Pav-HB-01-20_36Prunus aviumhaplotype
37Pav-HB-01-20_37Prunus aviumhaplotype
38Pav-HB-01-20_38Prunus aviumhaplotype
39Pav-HB-01-20_39Prunus aviumhaplotype
40Pav-HB-01-20_40Prunus aviumhaplotype
41Pav-HB-01-20_41Prunus aviumhaplotype
42Pav-HB-01-20_42Prunus aviumhaplotype
43Pav-HB-01-20_43Prunus aviumhaplotype
44Pav-HB-01-20_44Prunus aviumhaplotype
45Pav-HB-01-20_45Prunus aviumhaplotype
46Pav-HB-01-20_46Prunus aviumhaplotype
47Pav-HB-01-20_47Prunus aviumhaplotype
48Pav-HB-01-20_48Prunus aviumhaplotype
49Pav-HB-01-20_49Prunus aviumhaplotype
50Pav-HB-01-20_50Prunus aviumhaplotype
51Pav-HB-01-20_51Prunus aviumhaplotype
52Pav-HB-01-20_52Prunus aviumhaplotype
53Pav-HB-01-20_53Prunus aviumhaplotype
54Pav-HB-01-20_54Prunus aviumhaplotype
55Pav-HB-01-20_55Prunus aviumhaplotype
56Pav-HB-01-20_56Prunus aviumhaplotype
57Pav-HB-01-20_57Prunus aviumhaplotype
58Pav-HB-01-20_58Prunus aviumhaplotype
59Pav-HB-01-20_59Prunus aviumhaplotype
60Pav-HB-01-20_60Prunus aviumhaplotype
61Pav-HB-01-20_61Prunus aviumhaplotype
62Pav-HB-01-20_62Prunus aviumhaplotype
63Pav-HB-01-20_63Prunus aviumhaplotype
64Pav-HB-01-20_64Prunus aviumhaplotype
65Pav-HB-01-20_65Prunus aviumhaplotype
66Pav-HB-01-20_66Prunus aviumhaplotype
67Pav-HB-01-20_67Prunus aviumhaplotype
68Pav-HB-01-20_68Prunus aviumhaplotype
69Pav-HB-01-20_69Prunus aviumhaplotype
70Pav-HB-01-20_70Prunus aviumhaplotype
71Pav-HB-01-20_71Prunus aviumhaplotype
72Pav-HB-01-20_72Prunus aviumhaplotype
73Pav-HB-01-20_73Prunus aviumhaplotype
74Pav-HB-01-20_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RL-F1-2015R1N/A64.92Rsweet_1_24575772View
2Prunus-TE-6K cherry SNP-estimate1N/A32.83RosBREED_snp_sweet_cherry_Pp1_24575772View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A88.07RosBREED_snp_sweet_cherry_Pp1_24575772View
4Sweet Cherry-RL-F1-2014R1N/A70.3RosBREED_snp_sweet_cherry_Pp1_24575772View
5Sweet Cherry-RosBREED-3.8K-20201N/A66.12RosBREED_snp_sweet_cherry_Pp1_24575772View
6Sweet Cherry-RosBREED-1.6K-20191N/A65.34RosBREED_snp_sweet_cherry_Pp1_24575772View
7Sweet Cherry-RL-Regina-2013LG01N/A65.2ss490546874View
8Sweet Cherry-RL-F1-2013LG01N/A65.3ss490546874View
9Sour Cherry-M172x25-F1LG1N/A65.34RosBREED_snp_sweet_cherry_Pp1_24575772View
10SourCherry-Montx25-F1LG1N/A65.34RosBREED_snp_sweet_cherry_Pp1_24575772View
11SourCherry-25x25-F1LG1N/A65.34RosBREED_snp_sweet_cherry_Pp1_24575772View
12Sour Cherry-US-F1LG1N/A65.34RosBREED_snp_sweet_cherry_Pp1_24575772View
13SourCherry-RE-F1LG1N/A65.34RosBREED_snp_sweet_cherry_Pp1_24575772View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:24575772..24575772. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:25550078..25550078. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:19509755..19509755. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)