RosBREED_snp_sweet_cherry_Pp5_12646495, RosBREED_snp_sweet_cherry_Pp5_12646495 (genetic_marker) Prunus avium

Marker Overview
NameRosBREED_snp_sweet_cherry_Pp5_12646495
AliasRosBREED_snp_sweet_5_12646495
ss490554331
rs271788712
Rsweet_5_12646495
dbSNP IDss490554331
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_sweet_cherry_Pp5_12646495
TypeSNP
SNP AllelesA/G
SpeciesPrunus avium
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rsweet_5_12646495Rsweet_5_12646495Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp5_12646495RosBREED_snp_sweet_cherry_Pp5_12646495Prunus aviummarker_locus
ss490554331ss490554331Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-05-9Pav-HB-05-9Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-05-9_2Prunus aviumhaplotype
3Pav-HB-05-9_3Prunus aviumhaplotype
4Pav-HB-05-9_4Prunus aviumhaplotype
5Pav-HB-05-9_5Prunus aviumhaplotype
6Pav-HB-05-9_6Prunus aviumhaplotype
7Pav-HB-05-9_7Prunus aviumhaplotype
8Pav-HB-05-9_8Prunus aviumhaplotype
9Pav-HB-05-9_9Prunus aviumhaplotype
10Pav-HB-05-9_10Prunus aviumhaplotype
11Pav-HB-05-9_11Prunus aviumhaplotype
12Pav-HB-05-9_12Prunus aviumhaplotype
13Pav-HB-05-9_13Prunus aviumhaplotype
14Pav-HB-05-9_14Prunus aviumhaplotype
15Pav-HB-05-9_15Prunus aviumhaplotype
16Pav-HB-05-9_16Prunus aviumhaplotype
17Pav-HB-05-9_17Prunus aviumhaplotype
18Pav-HB-05-9_18Prunus aviumhaplotype
19Pav-HB-05-9_19Prunus aviumhaplotype
20Pav-HB-05-9_20Prunus aviumhaplotype
21Pav-HB-05-9_21Prunus aviumhaplotype
22Pav-HB-05-9_22Prunus aviumhaplotype
23Pav-HB-05-9_23Prunus aviumhaplotype
24Pav-HB-05-9_24Prunus aviumhaplotype
25Pav-HB-05-9_25Prunus aviumhaplotype
26Pav-HB-05-9_26Prunus aviumhaplotype
27Pav-HB-05-9_27Prunus aviumhaplotype
28Pav-HB-05-9_28Prunus aviumhaplotype
29Pav-HB-05-9_29Prunus aviumhaplotype
30Pav-HB-05-9_30Prunus aviumhaplotype
31Pav-HB-05-9_31Prunus aviumhaplotype
32Pav-HB-05-9_32Prunus aviumhaplotype
33Pav-HB-05-9_33Prunus aviumhaplotype
34Pav-HB-05-9_34Prunus aviumhaplotype
35Pav-HB-05-9_35Prunus aviumhaplotype
36Pav-HB-05-9_36Prunus aviumhaplotype
37Pav-HB-05-9_37Prunus aviumhaplotype
38Pav-HB-05-9_38Prunus aviumhaplotype
39Pav-HB-05-9_39Prunus aviumhaplotype
40Pav-HB-05-9_40Prunus aviumhaplotype
41Pav-HB-05-9_41Prunus aviumhaplotype
42Pav-HB-05-9_42Prunus aviumhaplotype
43Pav-HB-05-9_43Prunus aviumhaplotype
44Pav-HB-05-9_44Prunus aviumhaplotype
45Pav-HB-05-9_45Prunus aviumhaplotype
46Pav-HB-05-9_46Prunus aviumhaplotype
47Pav-HB-05-9_47Prunus aviumhaplotype
48Pav-HB-05-9_48Prunus aviumhaplotype
49Pav-HB-05-9_49Prunus aviumhaplotype
50Pav-HB-05-9_50Prunus aviumhaplotype
51Pav-HB-05-9_51Prunus aviumhaplotype
52Pav-HB-05-9_52Prunus aviumhaplotype
53Pav-HB-05-9_53Prunus aviumhaplotype
54Pav-HB-05-9_54Prunus aviumhaplotype
55Pav-HB-05-9_55Prunus aviumhaplotype
56Pav-HB-05-9_56Prunus aviumhaplotype
57Pav-HB-05-9_57Prunus aviumhaplotype
58Pav-HB-05-9_58Prunus aviumhaplotype
59Pav-HB-05-9_59Prunus aviumhaplotype
60Pav-HB-05-9_60Prunus aviumhaplotype
61Pav-HB-05-9_61Prunus aviumhaplotype
62Pav-HB-05-9_62Prunus aviumhaplotype
63Pav-HB-05-9_63Prunus aviumhaplotype
64Pav-HB-05-9_64Prunus aviumhaplotype
65Pav-HB-05-9_65Prunus aviumhaplotype
66Pav-HB-05-9_66Prunus aviumhaplotype
67Pav-HB-05-9_67Prunus aviumhaplotype
68Pav-HB-05-9_68Prunus aviumhaplotype
69Pav-HB-05-9_69Prunus aviumhaplotype
70Pav-HB-05-9_70Prunus aviumhaplotype
71Pav-HB-05-9_71Prunus aviumhaplotype
72Pav-HB-05-9_72Prunus aviumhaplotype
73Pav-HB-05-9_73Prunus aviumhaplotype
74Pav-HB-05-9_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RL-F1-2015L5N/A35.87Rsweet_5_12646495View
2Prunus-TE-6K cherry SNP-estimate5N/A26.64RosBREED_snp_sweet_cherry_Pp5_12646495View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate5N/A50.75RosBREED_snp_sweet_cherry_Pp5_12646495View
4Sweet Cherry-V-F1LG5N/A57.36RosBREED_snp_sweet_cherry_Pp5_12646495View
5Sweet Cherry-VxC-F1LG5N/A52.48RosBREED_snp_sweet_cherry_Pp5_12646495View
6Sweet Cherry-RosBREED-3.8K-20205N/A33.71RosBREED_snp_sweet_cherry_Pp5_12646495View
7Sweet Cherry-RosBREED-1.6K-20195N/A33.71RosBREED_snp_sweet_cherry_Pp5_12646495View
8Sweet Cherry-S-F15N/A29.45RosBREED_snp_sweet_cherry_Pp5_12646495View
9Sweet Cherry-AxS-F15N/A40.27RosBREED_snp_sweet_cherry_Pp5_12646495View
10Sweet Cherry-V-F1-6+9K_array5N/A46.79RosBREED_snp_sweet_cherry_Pp5_12646495View
11Sweet Cherry-VxC-F1-6+9K_array5N/A51.76RosBREED_snp_sweet_cherry_Pp5_12646495View
12Sweet Cherry-BTK-Black Tartarian-2013LG05N/A42.3ss490554331View
13Sweet Cherry-RL-Lapins-2013LG05N/A35.6ss490554331View
14Sweet Cherry-BTK-F1-2013LG05N/A39.9ss490554331View
15Sweet Cherry-RL-F1-2013LG05N/A35.9ss490554331View
Alignments
Feature NameTypeLocationAnalysis
scaffold_5 supercontig scaffold_5:12646495..12646495. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp05 chromosome Pp05:12641265..12641265. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr5 chromosome PAV_r1.0chr5:10164413..10164413. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)