RosCOS1559-306_snp_sweet_cherry_Pp3_20247750, RosCOS1559-306_snp_sweet_cherry_Pp3_20247750 (genetic_marker) Prunus avium

Marker Overview
NameRosCOS1559-306_snp_sweet_cherry_Pp3_20247750
AliasRosCOS1559-306_snp_sweet_3_20247750
ss490559159
rs271790314
R1559-306_3_20247750
dbSNP IDss490559159
SNP Array ID
IRSC 6K SNP array for cherry:RosCOS1559-306_snp_sweet_cherry_Pp3_20247750
TypeSNP
SNP AllelesT/G
SpeciesPrunus avium
Publication[view all]
Associated WithROSC_FMLY_CSA1_1559
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

This genetic_marker is associated with the following contig feature(s):

Feature NameUnique NameSpeciesType
ROSC_FMLY_CSA1_1559ROSC_FMLY_CSA1_1559Rosaceae Family Genera sp.contig


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
R1559-306_3_20247750R1559-306_3_20247750Prunus aviummarker_locus
RosCOS1559-306_snp_sweet_cherry_Pp3_20247750RosCOS1559-306_snp_sweet_cherry_Pp3_20247750Prunus aviummarker_locus
ss490559159ss490559159Prunus aviummarker_locus
RosCOS1559-306_snp_sweet_cherry_Pp3_20247750RosCOS1559-306_snp_sweet_cherry_Pp3_20247750-73.62Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-03-24Pav-HB-03-24Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-03-24_2Prunus aviumhaplotype
3Pav-HB-03-24_3Prunus aviumhaplotype
4Pav-HB-03-24_4Prunus aviumhaplotype
5Pav-HB-03-24_5Prunus aviumhaplotype
6Pav-HB-03-24_6Prunus aviumhaplotype
7Pav-HB-03-24_7Prunus aviumhaplotype
8Pav-HB-03-24_8Prunus aviumhaplotype
9Pav-HB-03-24_9Prunus aviumhaplotype
10Pav-HB-03-24_10Prunus aviumhaplotype
11Pav-HB-03-24_11Prunus aviumhaplotype
12Pav-HB-03-24_12Prunus aviumhaplotype
13Pav-HB-03-24_13Prunus aviumhaplotype
14Pav-HB-03-24_14Prunus aviumhaplotype
15Pav-HB-03-24_15Prunus aviumhaplotype
16Pav-HB-03-24_16Prunus aviumhaplotype
17Pav-HB-03-24_17Prunus aviumhaplotype
18Pav-HB-03-24_18Prunus aviumhaplotype
19Pav-HB-03-24_19Prunus aviumhaplotype
20Pav-HB-03-24_20Prunus aviumhaplotype
21Pav-HB-03-24_21Prunus aviumhaplotype
22Pav-HB-03-24_22Prunus aviumhaplotype
23Pav-HB-03-24_23Prunus aviumhaplotype
24Pav-HB-03-24_24Prunus aviumhaplotype
25Pav-HB-03-24_25Prunus aviumhaplotype
26Pav-HB-03-24_26Prunus aviumhaplotype
27Pav-HB-03-24_27Prunus aviumhaplotype
28Pav-HB-03-24_28Prunus aviumhaplotype
29Pav-HB-03-24_29Prunus aviumhaplotype
30Pav-HB-03-24_30Prunus aviumhaplotype
31Pav-HB-03-24_31Prunus aviumhaplotype
32Pav-HB-03-24_32Prunus aviumhaplotype
33Pav-HB-03-24_33Prunus aviumhaplotype
34Pav-HB-03-24_34Prunus aviumhaplotype
35Pav-HB-03-24_35Prunus aviumhaplotype
36Pav-HB-03-24_36Prunus aviumhaplotype
37Pav-HB-03-24_37Prunus aviumhaplotype
38Pav-HB-03-24_38Prunus aviumhaplotype
39Pav-HB-03-24_39Prunus aviumhaplotype
40Pav-HB-03-24_40Prunus aviumhaplotype
41Pav-HB-03-24_41Prunus aviumhaplotype
42Pav-HB-03-24_42Prunus aviumhaplotype
43Pav-HB-03-24_43Prunus aviumhaplotype
44Pav-HB-03-24_44Prunus aviumhaplotype
45Pav-HB-03-24_45Prunus aviumhaplotype
46Pav-HB-03-24_46Prunus aviumhaplotype
47Pav-HB-03-24_47Prunus aviumhaplotype
48Pav-HB-03-24_48Prunus aviumhaplotype
49Pav-HB-03-24_49Prunus aviumhaplotype
50Pav-HB-03-24_50Prunus aviumhaplotype
51Pav-HB-03-24_51Prunus aviumhaplotype
52Pav-HB-03-24_52Prunus aviumhaplotype
53Pav-HB-03-24_53Prunus aviumhaplotype
54Pav-HB-03-24_54Prunus aviumhaplotype
55Pav-HB-03-24_55Prunus aviumhaplotype
56Pav-HB-03-24_56Prunus aviumhaplotype
57Pav-HB-03-24_57Prunus aviumhaplotype
58Pav-HB-03-24_58Prunus aviumhaplotype
59Pav-HB-03-24_59Prunus aviumhaplotype
60Pav-HB-03-24_60Prunus aviumhaplotype
61Pav-HB-03-24_61Prunus aviumhaplotype
62Pav-HB-03-24_62Prunus aviumhaplotype
63Pav-HB-03-24_63Prunus aviumhaplotype
64Pav-HB-03-24_64Prunus aviumhaplotype
65Pav-HB-03-24_65Prunus aviumhaplotype
66Pav-HB-03-24_66Prunus aviumhaplotype
67Pav-HB-03-24_67Prunus aviumhaplotype
68Pav-HB-03-24_68Prunus aviumhaplotype
69Pav-HB-03-24_69Prunus aviumhaplotype
70Pav-HB-03-24_70Prunus aviumhaplotype
71Pav-HB-03-24_71Prunus aviumhaplotype
72Pav-HB-03-24_72Prunus aviumhaplotype
73Pav-HB-03-24_73Prunus aviumhaplotype
74Pav-HB-03-24_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015R3N/A58.5R1559-306_3_20247750View
2Sweet Cherry-RL-F1-2015L3N/A70.37R1559-306_3_20247750View
3Prunus-TE-6K cherry SNP-estimate3N/A43.53RosCOS1559-306_snp_sweet_cherry_Pp3_20247750View
4sweet cherry-consensus-map-2012-6K cherry SNP-estimate3N/A83.63RosCOS1559-306_snp_sweet_cherry_Pp3_20247750View
5Sweet Cherry-V-F1LG3N/A61.69RosCOS1559-306_snp_sweet_cherry_Pp3_20247750View
6Sweet Cherry-VxC-F1LG3N/A86.85RosCOS1559-306_snp_sweet_cherry_Pp3_20247750View
7Sweet Cherry-RG-F1-2014R3N/A67.4RosCOS1559-306_snp_sweet_cherry_Pp3_20247750View
8Sweet Cherry-RosBREED-1.6K-20193N/A73.62RosCOS1559-306_snp_sweet_cherry_Pp3_20247750View
9Sweet Cherry-RosBREED-3.8K-20203N/A75.61RosCOS1559-306_snp_sweet_cherry_Pp3_20247750View
10Sweet Cherry-AxS-F13N/A103.46RosCOS1559-306_snp_sweet_cherry_Pp3_20247750View
11Sweet Cherry-V-F1-6+9K_array3N/A52.15RosCOS1559-306_snp_sweet_cherry_Pp3_20247750View
12Sweet Cherry-VxC-F1-6+9K_array3N/A88.83RosCOS1559-306_snp_sweet_cherry_Pp3_20247750View
13Sweet Cherry-RL-F1-2013LG03N/A73.6ss490559159View
14Sour Cherry-M172x25-F1LG3N/A73.62RosCOS1559-306_snp_sweet_cherry_Pp3_20247750View
15SourCherry-RE-F1LG3N/A73.62RosCOS1559-306_snp_sweet_cherry_Pp3_20247750View
Alignments
Feature NameTypeLocationAnalysis
scaffold_3 supercontig scaffold_3:20247750..20247750. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp03 chromosome Pp03:25590333..25590333. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr3 chromosome PAV_r1.0chr3:20140698..20140698. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)