RosBREED_snp_sweet_cherry_Pp1_29638469, RosBREED_snp_sweet_cherry_Pp1_29638469 (genetic_marker) Prunus avium

Marker Overview
NameRosBREED_snp_sweet_cherry_Pp1_29638469
AliasRosBREED_snp_sweet_1_29638469
ss490547194
rs271786689
Rsweet_1_29638469
dbSNP IDss490547194
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_sweet_cherry_Pp1_29638469
TypeSNP
SNP AllelesA/G
SpeciesPrunus avium
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rsweet_1_29638469Rsweet_1_29638469Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp1_29638469RosBREED_snp_sweet_cherry_Pp1_29638469Prunus aviummarker_locus
ss490547194ss490547194Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp1_29638469RosBREED_snp_sweet_cherry_Pp1_29638469-73.28Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-01-24Pav-HB-01-24Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-01-24_2Prunus aviumhaplotype
3Pav-HB-01-24_3Prunus aviumhaplotype
4Pav-HB-01-24_4Prunus aviumhaplotype
5Pav-HB-01-24_5Prunus aviumhaplotype
6Pav-HB-01-24_6Prunus aviumhaplotype
7Pav-HB-01-24_7Prunus aviumhaplotype
8Pav-HB-01-24_8Prunus aviumhaplotype
9Pav-HB-01-24_9Prunus aviumhaplotype
10Pav-HB-01-24_10Prunus aviumhaplotype
11Pav-HB-01-24_11Prunus aviumhaplotype
12Pav-HB-01-24_12Prunus aviumhaplotype
13Pav-HB-01-24_13Prunus aviumhaplotype
14Pav-HB-01-24_14Prunus aviumhaplotype
15Pav-HB-01-24_15Prunus aviumhaplotype
16Pav-HB-01-24_16Prunus aviumhaplotype
17Pav-HB-01-24_17Prunus aviumhaplotype
18Pav-HB-01-24_18Prunus aviumhaplotype
19Pav-HB-01-24_19Prunus aviumhaplotype
20Pav-HB-01-24_20Prunus aviumhaplotype
21Pav-HB-01-24_21Prunus aviumhaplotype
22Pav-HB-01-24_22Prunus aviumhaplotype
23Pav-HB-01-24_23Prunus aviumhaplotype
24Pav-HB-01-24_24Prunus aviumhaplotype
25Pav-HB-01-24_25Prunus aviumhaplotype
26Pav-HB-01-24_26Prunus aviumhaplotype
27Pav-HB-01-24_27Prunus aviumhaplotype
28Pav-HB-01-24_28Prunus aviumhaplotype
29Pav-HB-01-24_29Prunus aviumhaplotype
30Pav-HB-01-24_30Prunus aviumhaplotype
31Pav-HB-01-24_31Prunus aviumhaplotype
32Pav-HB-01-24_32Prunus aviumhaplotype
33Pav-HB-01-24_33Prunus aviumhaplotype
34Pav-HB-01-24_34Prunus aviumhaplotype
35Pav-HB-01-24_35Prunus aviumhaplotype
36Pav-HB-01-24_36Prunus aviumhaplotype
37Pav-HB-01-24_37Prunus aviumhaplotype
38Pav-HB-01-24_38Prunus aviumhaplotype
39Pav-HB-01-24_39Prunus aviumhaplotype
40Pav-HB-01-24_40Prunus aviumhaplotype
41Pav-HB-01-24_41Prunus aviumhaplotype
42Pav-HB-01-24_42Prunus aviumhaplotype
43Pav-HB-01-24_43Prunus aviumhaplotype
44Pav-HB-01-24_44Prunus aviumhaplotype
45Pav-HB-01-24_45Prunus aviumhaplotype
46Pav-HB-01-24_46Prunus aviumhaplotype
47Pav-HB-01-24_47Prunus aviumhaplotype
48Pav-HB-01-24_48Prunus aviumhaplotype
49Pav-HB-01-24_49Prunus aviumhaplotype
50Pav-HB-01-24_50Prunus aviumhaplotype
51Pav-HB-01-24_51Prunus aviumhaplotype
52Pav-HB-01-24_52Prunus aviumhaplotype
53Pav-HB-01-24_53Prunus aviumhaplotype
54Pav-HB-01-24_54Prunus aviumhaplotype
55Pav-HB-01-24_55Prunus aviumhaplotype
56Pav-HB-01-24_56Prunus aviumhaplotype
57Pav-HB-01-24_57Prunus aviumhaplotype
58Pav-HB-01-24_58Prunus aviumhaplotype
59Pav-HB-01-24_59Prunus aviumhaplotype
60Pav-HB-01-24_60Prunus aviumhaplotype
61Pav-HB-01-24_61Prunus aviumhaplotype
62Pav-HB-01-24_62Prunus aviumhaplotype
63Pav-HB-01-24_63Prunus aviumhaplotype
64Pav-HB-01-24_64Prunus aviumhaplotype
65Pav-HB-01-24_65Prunus aviumhaplotype
66Pav-HB-01-24_66Prunus aviumhaplotype
67Pav-HB-01-24_67Prunus aviumhaplotype
68Pav-HB-01-24_68Prunus aviumhaplotype
69Pav-HB-01-24_69Prunus aviumhaplotype
70Pav-HB-01-24_70Prunus aviumhaplotype
71Pav-HB-01-24_71Prunus aviumhaplotype
72Pav-HB-01-24_72Prunus aviumhaplotype
73Pav-HB-01-24_73Prunus aviumhaplotype
74Pav-HB-01-24_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RL-F1-2015L1N/A76.12Rsweet_1_29638469View
2Prunus-TE-6K cherry SNP-estimate1N/A39.68RosBREED_snp_sweet_cherry_Pp1_29638469View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A101.09RosBREED_snp_sweet_cherry_Pp1_29638469View
4Sweet Cherry-V-F1LG1N/A86.41RosBREED_snp_sweet_cherry_Pp1_29638469View
5Sweet Cherry-VxC-F1LG1N/A84.78RosBREED_snp_sweet_cherry_Pp1_29638469View
6Sweet Cherry-BCxBC-F2LG1N/A76.73RosBREED_snp_sweet_cherry_Pp1_29638469View
7Sweet Cherry-RL-F1-2014L1N/A91.3RosBREED_snp_sweet_cherry_Pp1_29638469View
8Sweet Cherry-V-F1-6+9K_array1N/A77.76RosBREED_snp_sweet_cherry_Pp1_29638469View
9Sweet Cherry-RosBREED-3.8K-20201N/A85.61RosBREED_snp_sweet_cherry_Pp1_29638469View
10Sweet Cherry-RosBREED-1.6K-20191N/A84.83RosBREED_snp_sweet_cherry_Pp1_29638469View
11Sweet Cherry-VxC-F1-6+9K_array1N/A108.37RosBREED_snp_sweet_cherry_Pp1_29638469View
12Sweet Cherry-BTK-Black Tartarian-2013LG01N/A96.1ss490547194View
13Sweet Cherry-RL-Lapins-2013LG01N/A79.7ss490547194View
14SweetCherry-FX-F1-XX1N/A73.28RosBREED_snp_sweet_cherry_Pp1_29638469View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:29638469..29638469. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:30612416..30612416. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:24998245..24998245. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)