RosCOS1363-161_snp_sweet_cherry_Pp4_10403896, RosCOS1363-161_snp_sweet_cherry_Pp4_10403896 (genetic_marker) Prunus avium

Marker Overview
NameRosCOS1363-161_snp_sweet_cherry_Pp4_10403896
AliasRosCOS1363-161_snp_sweet_4_10403896
ss490559054
rs271790278
R1363-161_4_10403896
dbSNP IDss490559054
SNP Array ID
IRSC 6K SNP array for cherry:RosCOS1363-161_snp_sweet_cherry_Pp4_10403896
TypeSNP
SNP AllelesT/G
SpeciesPrunus avium
PolymorphismP_ RosCOS1363-161_snp_sweet_cherry_Pp4_10403896
Publication[view all]
Associated WithROSC_FMLY_CSA1_1363
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

This genetic_marker is associated with the following contig feature(s):

Feature NameUnique NameSpeciesType
ROSC_FMLY_CSA1_1363ROSC_FMLY_CSA1_1363Rosaceae Family Genera sp.contig


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
GR:4:7-13GR:4:7-13Prunus cerasushaplotype_block
Pav-HB-04-11Pav-HB-04-11Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
aGR:4:7-13_aPrunus aviumhaplotype
bGR:4:7-13_bPrunus aviumhaplotype
cGR:4:7-13_cPrunus aviumhaplotype
dGR:4:7-13_dPrunus aviumhaplotype
eGR:4:7-13_ePrunus aviumhaplotype
fGR:4:7-13_fPrunus aviumhaplotype
gGR:4:7-13_gPrunus aviumhaplotype
hGR:4:7-13_hPrunus aviumhaplotype
iGR:4:7-13_iPrunus aviumhaplotype
jGR:4:7-13_jPrunus aviumhaplotype
kGR:4:7-13_kPrunus aviumhaplotype
lGR:4:7-13_lPrunus aviumhaplotype
mGR:4:7-13_mPrunus aviumhaplotype
nGR:4:7-13_nPrunus aviumhaplotype
oGR:4:7-13_oPrunus aviumhaplotype
pGR:4:7-13_pPrunus aviumhaplotype
qGR:4:7-13_qPrunus aviumhaplotype
rGR:4:7-13_rPrunus aviumhaplotype
sGR:4:7-13_sPrunus aviumhaplotype
x1GR:4:7-13_x1Prunus aviumhaplotype
x2GR:4:7-13_x2Prunus aviumhaplotype
x3GR:4:7-13_x3Prunus aviumhaplotype
x4GR:4:7-13_x4Prunus aviumhaplotype
x5GR:4:7-13_x5Prunus aviumhaplotype
x6GR:4:7-13_x6Prunus aviumhaplotype
x7GR:4:7-13_x7Prunus aviumhaplotype
x8GR:4:7-13_x8Prunus aviumhaplotype
d1GR:4:7-13_d1Prunus aviumhaplotype
d2GR:4:7-13_d2Prunus aviumhaplotype
d3GR:4:7-13_d3Prunus aviumhaplotype
d4GR:4:7-13_d4Prunus aviumhaplotype
1'GR:4:7-13_1'Prunus aviumhaplotype
4GR:4:7-13_4Prunus aviumhaplotype
6GR:4:7-13_6Prunus aviumhaplotype
13'GR:4:7-13_13'Prunus aviumhaplotype
13mGR:4:7-13_13mPrunus aviumhaplotype
14GR:4:7-13_14Prunus aviumhaplotype
16GR:4:7-13_16Prunus aviumhaplotype
34GR:4:7-13_34Prunus aviumhaplotype
35GR:4:7-13_35Prunus aviumhaplotype
36aGR:4:7-13_36aPrunus aviumhaplotype
36bGR:4:7-13_36bPrunus aviumhaplotype
36b2GR:4:7-13_36b2Prunus aviumhaplotype
2Pav-HB-04-11_2Prunus aviumhaplotype
3Pav-HB-04-11_3Prunus aviumhaplotype
4Pav-HB-04-11_4Prunus aviumhaplotype
5Pav-HB-04-11_5Prunus aviumhaplotype
6Pav-HB-04-11_6Prunus aviumhaplotype
7Pav-HB-04-11_7Prunus aviumhaplotype
8Pav-HB-04-11_8Prunus aviumhaplotype
9Pav-HB-04-11_9Prunus aviumhaplotype
10Pav-HB-04-11_10Prunus aviumhaplotype
11Pav-HB-04-11_11Prunus aviumhaplotype
12Pav-HB-04-11_12Prunus aviumhaplotype
13Pav-HB-04-11_13Prunus aviumhaplotype
14Pav-HB-04-11_14Prunus aviumhaplotype
15Pav-HB-04-11_15Prunus aviumhaplotype
16Pav-HB-04-11_16Prunus aviumhaplotype
17Pav-HB-04-11_17Prunus aviumhaplotype
18Pav-HB-04-11_18Prunus aviumhaplotype
19Pav-HB-04-11_19Prunus aviumhaplotype
20Pav-HB-04-11_20Prunus aviumhaplotype
21Pav-HB-04-11_21Prunus aviumhaplotype
22Pav-HB-04-11_22Prunus aviumhaplotype
23Pav-HB-04-11_23Prunus aviumhaplotype
24Pav-HB-04-11_24Prunus aviumhaplotype
25Pav-HB-04-11_25Prunus aviumhaplotype
26Pav-HB-04-11_26Prunus aviumhaplotype
27Pav-HB-04-11_27Prunus aviumhaplotype
28Pav-HB-04-11_28Prunus aviumhaplotype
29Pav-HB-04-11_29Prunus aviumhaplotype
30Pav-HB-04-11_30Prunus aviumhaplotype
31Pav-HB-04-11_31Prunus aviumhaplotype
32Pav-HB-04-11_32Prunus aviumhaplotype
33Pav-HB-04-11_33Prunus aviumhaplotype
34Pav-HB-04-11_34Prunus aviumhaplotype
35Pav-HB-04-11_35Prunus aviumhaplotype
36Pav-HB-04-11_36Prunus aviumhaplotype
37Pav-HB-04-11_37Prunus aviumhaplotype
38Pav-HB-04-11_38Prunus aviumhaplotype
39Pav-HB-04-11_39Prunus aviumhaplotype
40Pav-HB-04-11_40Prunus aviumhaplotype
41Pav-HB-04-11_41Prunus aviumhaplotype
42Pav-HB-04-11_42Prunus aviumhaplotype
43Pav-HB-04-11_43Prunus aviumhaplotype
44Pav-HB-04-11_44Prunus aviumhaplotype
45Pav-HB-04-11_45Prunus aviumhaplotype
46Pav-HB-04-11_46Prunus aviumhaplotype
47Pav-HB-04-11_47Prunus aviumhaplotype
48Pav-HB-04-11_48Prunus aviumhaplotype
49Pav-HB-04-11_49Prunus aviumhaplotype
50Pav-HB-04-11_50Prunus aviumhaplotype
51Pav-HB-04-11_51Prunus aviumhaplotype
52Pav-HB-04-11_52Prunus aviumhaplotype
53Pav-HB-04-11_53Prunus aviumhaplotype
54Pav-HB-04-11_54Prunus aviumhaplotype
55Pav-HB-04-11_55Prunus aviumhaplotype
56Pav-HB-04-11_56Prunus aviumhaplotype
57Pav-HB-04-11_57Prunus aviumhaplotype
58Pav-HB-04-11_58Prunus aviumhaplotype
59Pav-HB-04-11_59Prunus aviumhaplotype
60Pav-HB-04-11_60Prunus aviumhaplotype
61Pav-HB-04-11_61Prunus aviumhaplotype
62Pav-HB-04-11_62Prunus aviumhaplotype
63Pav-HB-04-11_63Prunus aviumhaplotype
64Pav-HB-04-11_64Prunus aviumhaplotype
65Pav-HB-04-11_65Prunus aviumhaplotype
66Pav-HB-04-11_66Prunus aviumhaplotype
67Pav-HB-04-11_67Prunus aviumhaplotype
68Pav-HB-04-11_68Prunus aviumhaplotype
69Pav-HB-04-11_69Prunus aviumhaplotype
70Pav-HB-04-11_70Prunus aviumhaplotype
71Pav-HB-04-11_71Prunus aviumhaplotype
72Pav-HB-04-11_72Prunus aviumhaplotype
73Pav-HB-04-11_73Prunus aviumhaplotype
74Pav-HB-04-11_74Prunus aviumhaplotype


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
R1363-161_4_10403896R1363-161_4_10403896Prunus aviummarker_locus
RosCOS1363-161_snp_sweet_cherry_Pp4_10403896RosCOS1363-161_snp_sweet_cherry_Pp4_10403896Prunus aviummarker_locus
RosCOS1363-161_snp_sweet_cherry_Pp4_10403896RosCOS1363-161_snp_sweet_cherry_Pp4_10403896-33.57Prunus aviummarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015R4N/A31.98R1363-161_4_10403896View
2Prunus-TE-6K cherry SNP-estimate4N/A35.99RosCOS1363-161_snp_sweet_cherry_Pp4_10403896View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate4N/A34.81RosCOS1363-161_snp_sweet_cherry_Pp4_10403896View
4Sweet Cherry-V-F1LG4N/A47.45RosCOS1363-161_snp_sweet_cherry_Pp4_10403896View
5Sweet Cherry-VxC-F1LG4N/A50.97RosCOS1363-161_snp_sweet_cherry_Pp4_10403896View
6Sweet Cherry-RosBREED-1.6K-20194N/A33.57RosCOS1363-161_snp_sweet_cherry_Pp4_10403896View
7Sweet Cherry-RosBREED-3.8K-20204N/A33.9RosCOS1363-161_snp_sweet_cherry_Pp4_10403896View
8Sweet Cherry-V-F1-6+9K_array4N/A44.33RosCOS1363-161_snp_sweet_cherry_Pp4_10403896View
9Sweet Cherry-VxC-F1-6+9K_array4N/A49.97RosCOS1363-161_snp_sweet_cherry_Pp4_10403896View
10Sour Cherry-M172x25-F1LG4N/A33.57RosCOS1363-161_snp_sweet_cherry_Pp4_10403896View
11SourCherry-Montx25-F1LG4N/A33.57RosCOS1363-161_snp_sweet_cherry_Pp4_10403896View
12SourCherry-25x25-F1LG4N/A33.57RosCOS1363-161_snp_sweet_cherry_Pp4_10403896View
13Sour Cherry-US-F1LG4N/A33.57RosCOS1363-161_snp_sweet_cherry_Pp4_10403896View
14SourCherry-RE-F1LG4N/A33.57RosCOS1363-161_snp_sweet_cherry_Pp4_10403896View
Alignments
Feature NameTypeLocationAnalysis
scaffold_4 supercontig scaffold_4:10403896..10403896. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp04 chromosome Pp04:10414884..10414884. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr4 chromosome PAV_r1.0chr4:13304990..13304990. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)