RosCOS1396-262_snp_sweet_cherry_Pp7_17855163, RosCOS1396-262_snp_sweet_cherry_Pp7_17855163 (genetic_marker) Prunus avium

Marker Overview
NameRosCOS1396-262_snp_sweet_cherry_Pp7_17855163
AliasRosCOS1396-262_snp_sweet_7_17855163
ss490559061
rs271790280
R1396-262_7_17855163
dbSNP IDss490559061
SNP Array ID
IRSC 6K SNP array for cherry:RosCOS1396-262_snp_sweet_cherry_Pp7_17855163
TypeSNP
SNP AllelesT/C
SpeciesPrunus avium
Publication[view all]
Associated WithROSC_FMLY_CSA1_1396
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

This genetic_marker is associated with the following contig feature(s):

Feature NameUnique NameSpeciesType
ROSC_FMLY_CSA1_1396ROSC_FMLY_CSA1_1396Rosaceae Family Genera sp.contig


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
R1396-262_7_17855163R1396-262_7_17855163Prunus aviummarker_locus
RosCOS1396-262_snp_sweet_cherry_Pp7_17855163RosCOS1396-262_snp_sweet_cherry_Pp7_17855163Prunus aviummarker_locus
ss490559061ss490559061Prunus aviummarker_locus
RosCOS1396-262_snp_sweet_cherry_Pp7_17855163RosCOS1396-262_snp_sweet_cherry_Pp7_17855163-45.57Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-07-13Pav-HB-07-13Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-07-13_2Prunus aviumhaplotype
3Pav-HB-07-13_3Prunus aviumhaplotype
4Pav-HB-07-13_4Prunus aviumhaplotype
5Pav-HB-07-13_5Prunus aviumhaplotype
6Pav-HB-07-13_6Prunus aviumhaplotype
7Pav-HB-07-13_7Prunus aviumhaplotype
8Pav-HB-07-13_8Prunus aviumhaplotype
9Pav-HB-07-13_9Prunus aviumhaplotype
10Pav-HB-07-13_10Prunus aviumhaplotype
11Pav-HB-07-13_11Prunus aviumhaplotype
12Pav-HB-07-13_12Prunus aviumhaplotype
13Pav-HB-07-13_13Prunus aviumhaplotype
14Pav-HB-07-13_14Prunus aviumhaplotype
15Pav-HB-07-13_15Prunus aviumhaplotype
16Pav-HB-07-13_16Prunus aviumhaplotype
17Pav-HB-07-13_17Prunus aviumhaplotype
18Pav-HB-07-13_18Prunus aviumhaplotype
19Pav-HB-07-13_19Prunus aviumhaplotype
20Pav-HB-07-13_20Prunus aviumhaplotype
21Pav-HB-07-13_21Prunus aviumhaplotype
22Pav-HB-07-13_22Prunus aviumhaplotype
23Pav-HB-07-13_23Prunus aviumhaplotype
24Pav-HB-07-13_24Prunus aviumhaplotype
25Pav-HB-07-13_25Prunus aviumhaplotype
26Pav-HB-07-13_26Prunus aviumhaplotype
27Pav-HB-07-13_27Prunus aviumhaplotype
28Pav-HB-07-13_28Prunus aviumhaplotype
29Pav-HB-07-13_29Prunus aviumhaplotype
30Pav-HB-07-13_30Prunus aviumhaplotype
31Pav-HB-07-13_31Prunus aviumhaplotype
32Pav-HB-07-13_32Prunus aviumhaplotype
33Pav-HB-07-13_33Prunus aviumhaplotype
34Pav-HB-07-13_34Prunus aviumhaplotype
35Pav-HB-07-13_35Prunus aviumhaplotype
36Pav-HB-07-13_36Prunus aviumhaplotype
37Pav-HB-07-13_37Prunus aviumhaplotype
38Pav-HB-07-13_38Prunus aviumhaplotype
39Pav-HB-07-13_39Prunus aviumhaplotype
40Pav-HB-07-13_40Prunus aviumhaplotype
41Pav-HB-07-13_41Prunus aviumhaplotype
42Pav-HB-07-13_42Prunus aviumhaplotype
43Pav-HB-07-13_43Prunus aviumhaplotype
44Pav-HB-07-13_44Prunus aviumhaplotype
45Pav-HB-07-13_45Prunus aviumhaplotype
46Pav-HB-07-13_46Prunus aviumhaplotype
47Pav-HB-07-13_47Prunus aviumhaplotype
48Pav-HB-07-13_48Prunus aviumhaplotype
49Pav-HB-07-13_49Prunus aviumhaplotype
50Pav-HB-07-13_50Prunus aviumhaplotype
51Pav-HB-07-13_51Prunus aviumhaplotype
52Pav-HB-07-13_52Prunus aviumhaplotype
53Pav-HB-07-13_53Prunus aviumhaplotype
54Pav-HB-07-13_54Prunus aviumhaplotype
55Pav-HB-07-13_55Prunus aviumhaplotype
56Pav-HB-07-13_56Prunus aviumhaplotype
57Pav-HB-07-13_57Prunus aviumhaplotype
58Pav-HB-07-13_58Prunus aviumhaplotype
59Pav-HB-07-13_59Prunus aviumhaplotype
60Pav-HB-07-13_60Prunus aviumhaplotype
61Pav-HB-07-13_61Prunus aviumhaplotype
62Pav-HB-07-13_62Prunus aviumhaplotype
63Pav-HB-07-13_63Prunus aviumhaplotype
64Pav-HB-07-13_64Prunus aviumhaplotype
65Pav-HB-07-13_65Prunus aviumhaplotype
66Pav-HB-07-13_66Prunus aviumhaplotype
67Pav-HB-07-13_67Prunus aviumhaplotype
68Pav-HB-07-13_68Prunus aviumhaplotype
69Pav-HB-07-13_69Prunus aviumhaplotype
70Pav-HB-07-13_70Prunus aviumhaplotype
71Pav-HB-07-13_71Prunus aviumhaplotype
72Pav-HB-07-13_72Prunus aviumhaplotype
73Pav-HB-07-13_73Prunus aviumhaplotype
74Pav-HB-07-13_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015R7N/A39.99R1396-262_7_17855163View
2Sweet Cherry-RL-F1-2015L7N/A49.21R1396-262_7_17855163View
3Prunus-TE-6K cherry SNP-estimate7N/A45.48RosCOS1396-262_snp_sweet_cherry_Pp7_17855163View
4sweet cherry-consensus-map-2012-6K cherry SNP-estimate7N/A55.98RosCOS1396-262_snp_sweet_cherry_Pp7_17855163View
5Sweet Cherry-V-F1LG7N/A49.08RosCOS1396-262_snp_sweet_cherry_Pp7_17855163View
6Sweet Cherry-VxC-F1LG7N/A52.95RosCOS1396-262_snp_sweet_cherry_Pp7_17855163View
7Sweet Cherry-BCxBC-F2LG7N/A49.79RosCOS1396-262_snp_sweet_cherry_Pp7_17855163View
8Sweet Cherry-RG-F1-2014R7N/A40.3RosCOS1396-262_snp_sweet_cherry_Pp7_17855163View
9Sweet Cherry-RosBREED-1.6K-20197N/A45.57RosCOS1396-262_snp_sweet_cherry_Pp7_17855163View
10Sweet Cherry-RosBREED-3.8K-20207N/A46.69RosCOS1396-262_snp_sweet_cherry_Pp7_17855163View
11Sweet Cherry-A-F17N/A78.22RosCOS1396-262_snp_sweet_cherry_Pp7_17855163View
12Sweet Cherry-AxS-F17N/A68.21RosCOS1396-262_snp_sweet_cherry_Pp7_17855163View
13Sweet Cherry-V-F1-6+9K_array7N/A41.44RosCOS1396-262_snp_sweet_cherry_Pp7_17855163View
14Sweet Cherry-VxC-F1-6+9K_array7N/A49.63RosCOS1396-262_snp_sweet_cherry_Pp7_17855163View
15Sweet Cherry-BTK-Black Tartarian-2013LG07N/A43.7ss490559061View
16Sweet Cherry-BTK-F1-2013LG07N/A42.8ss490559061View
17Sweet Cherry-RL-F1-2013LG07N/A45.6ss490559061View
18Sour Cherry-M172x25-F1LG7N/A45.57RosCOS1396-262_snp_sweet_cherry_Pp7_17855163View
19SourCherry-RE-F1LG7N/A45.57RosCOS1396-262_snp_sweet_cherry_Pp7_17855163View
Alignments
Feature NameTypeLocationAnalysis
scaffold_7 supercontig scaffold_7:17855163..17855163. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp07 chromosome Pp07:17453814..17453814. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr7 chromosome PAV_r1.0chr7:14414375..14414375. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)