RosCOS1400-158_snp_sweet_cherry_Pp7_15629934, RosCOS1400-158_snp_sweet_cherry_Pp7_15629934 (genetic_marker) Prunus avium

Marker Overview
NameRosCOS1400-158_snp_sweet_cherry_Pp7_15629934
AliasRosCOS1400-158_snp_sweet_7_15629934
ss490559064
rs271790281
R1400-158_7_15629934
dbSNP IDss490559064
SNP Array ID
IRSC 6K SNP array for cherry:RosCOS1400-158_snp_sweet_cherry_Pp7_15629934
TypeSNP
SNP AllelesA/G
SpeciesPrunus avium
Publication[view all]
Associated WithROSC_FMLY_CSA1_1400
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

This genetic_marker is associated with the following contig feature(s):

Feature NameUnique NameSpeciesType
ROSC_FMLY_CSA1_1400ROSC_FMLY_CSA1_1400Rosaceae Family Genera sp.contig


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
R1400-158_7_15629934R1400-158_7_15629934Prunus aviummarker_locus
RosCOS1400-158_snp_sweet_cherry_Pp7_15629934RosCOS1400-158_snp_sweet_cherry_Pp7_15629934Prunus aviummarker_locus
ss490559064ss490559064Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-07-9Pav-HB-07-9Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-07-9_2Prunus aviumhaplotype
3Pav-HB-07-9_3Prunus aviumhaplotype
4Pav-HB-07-9_4Prunus aviumhaplotype
5Pav-HB-07-9_5Prunus aviumhaplotype
6Pav-HB-07-9_6Prunus aviumhaplotype
7Pav-HB-07-9_7Prunus aviumhaplotype
8Pav-HB-07-9_8Prunus aviumhaplotype
9Pav-HB-07-9_9Prunus aviumhaplotype
10Pav-HB-07-9_10Prunus aviumhaplotype
11Pav-HB-07-9_11Prunus aviumhaplotype
12Pav-HB-07-9_12Prunus aviumhaplotype
13Pav-HB-07-9_13Prunus aviumhaplotype
14Pav-HB-07-9_14Prunus aviumhaplotype
15Pav-HB-07-9_15Prunus aviumhaplotype
16Pav-HB-07-9_16Prunus aviumhaplotype
17Pav-HB-07-9_17Prunus aviumhaplotype
18Pav-HB-07-9_18Prunus aviumhaplotype
19Pav-HB-07-9_19Prunus aviumhaplotype
20Pav-HB-07-9_20Prunus aviumhaplotype
21Pav-HB-07-9_21Prunus aviumhaplotype
22Pav-HB-07-9_22Prunus aviumhaplotype
23Pav-HB-07-9_23Prunus aviumhaplotype
24Pav-HB-07-9_24Prunus aviumhaplotype
25Pav-HB-07-9_25Prunus aviumhaplotype
26Pav-HB-07-9_26Prunus aviumhaplotype
27Pav-HB-07-9_27Prunus aviumhaplotype
28Pav-HB-07-9_28Prunus aviumhaplotype
29Pav-HB-07-9_29Prunus aviumhaplotype
30Pav-HB-07-9_30Prunus aviumhaplotype
31Pav-HB-07-9_31Prunus aviumhaplotype
32Pav-HB-07-9_32Prunus aviumhaplotype
33Pav-HB-07-9_33Prunus aviumhaplotype
34Pav-HB-07-9_34Prunus aviumhaplotype
35Pav-HB-07-9_35Prunus aviumhaplotype
36Pav-HB-07-9_36Prunus aviumhaplotype
37Pav-HB-07-9_37Prunus aviumhaplotype
38Pav-HB-07-9_38Prunus aviumhaplotype
39Pav-HB-07-9_39Prunus aviumhaplotype
40Pav-HB-07-9_40Prunus aviumhaplotype
41Pav-HB-07-9_41Prunus aviumhaplotype
42Pav-HB-07-9_42Prunus aviumhaplotype
43Pav-HB-07-9_43Prunus aviumhaplotype
44Pav-HB-07-9_44Prunus aviumhaplotype
45Pav-HB-07-9_45Prunus aviumhaplotype
46Pav-HB-07-9_46Prunus aviumhaplotype
47Pav-HB-07-9_47Prunus aviumhaplotype
48Pav-HB-07-9_48Prunus aviumhaplotype
49Pav-HB-07-9_49Prunus aviumhaplotype
50Pav-HB-07-9_50Prunus aviumhaplotype
51Pav-HB-07-9_51Prunus aviumhaplotype
52Pav-HB-07-9_52Prunus aviumhaplotype
53Pav-HB-07-9_53Prunus aviumhaplotype
54Pav-HB-07-9_54Prunus aviumhaplotype
55Pav-HB-07-9_55Prunus aviumhaplotype
56Pav-HB-07-9_56Prunus aviumhaplotype
57Pav-HB-07-9_57Prunus aviumhaplotype
58Pav-HB-07-9_58Prunus aviumhaplotype
59Pav-HB-07-9_59Prunus aviumhaplotype
60Pav-HB-07-9_60Prunus aviumhaplotype
61Pav-HB-07-9_61Prunus aviumhaplotype
62Pav-HB-07-9_62Prunus aviumhaplotype
63Pav-HB-07-9_63Prunus aviumhaplotype
64Pav-HB-07-9_64Prunus aviumhaplotype
65Pav-HB-07-9_65Prunus aviumhaplotype
66Pav-HB-07-9_66Prunus aviumhaplotype
67Pav-HB-07-9_67Prunus aviumhaplotype
68Pav-HB-07-9_68Prunus aviumhaplotype
69Pav-HB-07-9_69Prunus aviumhaplotype
70Pav-HB-07-9_70Prunus aviumhaplotype
71Pav-HB-07-9_71Prunus aviumhaplotype
72Pav-HB-07-9_72Prunus aviumhaplotype
73Pav-HB-07-9_73Prunus aviumhaplotype
74Pav-HB-07-9_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RL-F1-2015L7N/A39.56R1400-158_7_15629934View
2Prunus-TE-6K cherry SNP-estimate7N/A34.3RosCOS1400-158_snp_sweet_cherry_Pp7_15629934View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate7N/A44.02RosCOS1400-158_snp_sweet_cherry_Pp7_15629934View
4Sweet Cherry-RL-F1-2014L7N/A42.7RosCOS1400-158_snp_sweet_cherry_Pp7_15629934View
5Sweet Cherry-RosBREED-1.6K-20197N/A35.4RosCOS1400-158_snp_sweet_cherry_Pp7_15629934View
6Sweet Cherry-RosBREED-3.8K-20207N/A36.52RosCOS1400-158_snp_sweet_cherry_Pp7_15629934View
7Sweet Cherry-RL-Lapins-2013LG07N/A39.4ss490559064View
8Sweet Cherry-RL-F1-2013LG07N/A35.4ss490559064View
Alignments
Feature NameTypeLocationAnalysis
scaffold_7 supercontig scaffold_7:15629934..15629934. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp07 chromosome Pp07:15228463..15228463. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr7 chromosome PAV_r1.0chr7:12024638..12024638. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)