RosCOS1616-297_snp_sweet_cherry_Pp5_01709155, RosCOS1616-297_snp_sweet_cherry_Pp5_01709155 (genetic_marker) Prunus avium

Marker Overview

Name

RosCOS1616-297_snp_sweet_cherry_Pp5_01709155

dbSNP ID

SNP Array ID

IRSC 6K SNP array for cherry:

RosCOS1616-297_snp_sweet_cherry_Pp5_01709155

Type

SNP

SNP Alleles

A/C

Species

Publication

Associated With

Libraries


Library Name	Type
IRSC 6K SNP array for cherry	SNP_chip

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a1	2016-11-21

Publications


Year	Publication
2012	Peace C, Bassil N, Main D, Ficklin S, Rosyara UR, Stegmeir T, Sebolt A, Gilmore B, Lawley C, Mockler TC, Bryant DW, Wilhelm L, Iezzoni A. Development and evaluation of a genome-wide 6K SNP array for diploid sweet cherry and tetraploid sour cherry. PloS one. 2012; 7(12):e48305.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Sweet Cherry-RG-F1-2015	G5	N/A	4.45	R1616-297_5_01709155	View
2	Sweet Cherry-RL-F1-2015	L5	N/A	3.43	R1616-297_5_01709155	View
3	Prunus-TE-6K cherry SNP-estimate	5	N/A	2.18	RosCOS1616-297_snp_sweet_cherry_Pp5_01709155	View
4	sweet cherry-consensus-map-2012-6K cherry SNP-estimate	5	N/A	6.2	RosCOS1616-297_snp_sweet_cherry_Pp5_01709155	View
5	Sweet Cherry-VxC-F1	LG5	N/A	1.89	RosCOS1616-297_snp_sweet_cherry_Pp5_01709155	View
6	Sweet Cherry-CxC-F2	LG5	N/A	1.6	RosCOS1616-297_snp_sweet_cherry_Pp5_01709155	View
7	Sweet Cherry-BCxBC-F2	LG5	N/A	1.51	RosCOS1616-297_snp_sweet_cherry_Pp5_01709155	View
8	Sweet Cherry-RL-F1-2014	L5	N/A	3.4	RosCOS1616-297_snp_sweet_cherry_Pp5_01709155	View
9	Sweet Cherry-RG-F1-2014	G5	N/A	4.5	RosCOS1616-297_snp_sweet_cherry_Pp5_01709155	View
10	Sweet Cherry-S-F1	5	N/A	3.88	RosCOS1616-297_snp_sweet_cherry_Pp5_01709155	View
11	Sweet Cherry-AxS-F1	5	N/A	2.44	RosCOS1616-297_snp_sweet_cherry_Pp5_01709155	View
12	Sweet Cherry-VxC-F1-6+9K_array	5	N/A	2.6	RosCOS1616-297_snp_sweet_cherry_Pp5_01709155	View
13	Sweet Cherry-RL-Lapins-2023	L5	N/A	3.75	RosCOS1616-297_snp_sweet_cherry_Pp5_01709155	View
14	Sweet Cherry-BTK-Black Tartarian-2013	LG05	N/A	1.1	ss490559171	View
15	Sweet Cherry-RL-Lapins-2013	LG05	N/A	3.3	ss490559171	View
16	Sweet Cherry-BTK-F1-2013	LG05	N/A	1.1	ss490559171	View
17	Sweet Cherry-RL-F1-2013	LG05	N/A	3.4	ss490559171	View

Alignments

Feature Name	Type	Location	Analysis
scaffold_5	supercontig	scaffold_5:1709155..1709155.	Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp05	chromosome	Pp05:1709139..1709139.	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr5	chromosome	PAV_r1.0chr5:1619325..1619325.	Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)