RosBREED_snp_sweet_cherry_Pp1_33035979, RosBREED_snp_sweet_cherry_Pp1_33035979 (genetic_marker) Prunus avium

Marker Overview
NameRosBREED_snp_sweet_cherry_Pp1_33035979
AliasRosBREED_snp_sweet_1_33035979
ss490547518
rs271786773
Rsweet_1_33035979
dbSNP IDss490547518
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_sweet_cherry_Pp1_33035979
TypeSNP
SNP AllelesA/G
SpeciesPrunus avium
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rsweet_1_33035979Rsweet_1_33035979Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp1_33035979RosBREED_snp_sweet_cherry_Pp1_33035979Prunus aviummarker_locus
ss490547518ss490547518Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp1_33035979RosBREED_snp_sweet_cherry_Pp1_33035979-96.05Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-01-28Pav-HB-01-28Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-01-28_2Prunus aviumhaplotype
3Pav-HB-01-28_3Prunus aviumhaplotype
4Pav-HB-01-28_4Prunus aviumhaplotype
5Pav-HB-01-28_5Prunus aviumhaplotype
6Pav-HB-01-28_6Prunus aviumhaplotype
7Pav-HB-01-28_7Prunus aviumhaplotype
8Pav-HB-01-28_8Prunus aviumhaplotype
9Pav-HB-01-28_9Prunus aviumhaplotype
10Pav-HB-01-28_10Prunus aviumhaplotype
11Pav-HB-01-28_11Prunus aviumhaplotype
12Pav-HB-01-28_12Prunus aviumhaplotype
13Pav-HB-01-28_13Prunus aviumhaplotype
14Pav-HB-01-28_14Prunus aviumhaplotype
15Pav-HB-01-28_15Prunus aviumhaplotype
16Pav-HB-01-28_16Prunus aviumhaplotype
17Pav-HB-01-28_17Prunus aviumhaplotype
18Pav-HB-01-28_18Prunus aviumhaplotype
19Pav-HB-01-28_19Prunus aviumhaplotype
20Pav-HB-01-28_20Prunus aviumhaplotype
21Pav-HB-01-28_21Prunus aviumhaplotype
22Pav-HB-01-28_22Prunus aviumhaplotype
23Pav-HB-01-28_23Prunus aviumhaplotype
24Pav-HB-01-28_24Prunus aviumhaplotype
25Pav-HB-01-28_25Prunus aviumhaplotype
26Pav-HB-01-28_26Prunus aviumhaplotype
27Pav-HB-01-28_27Prunus aviumhaplotype
28Pav-HB-01-28_28Prunus aviumhaplotype
29Pav-HB-01-28_29Prunus aviumhaplotype
30Pav-HB-01-28_30Prunus aviumhaplotype
31Pav-HB-01-28_31Prunus aviumhaplotype
32Pav-HB-01-28_32Prunus aviumhaplotype
33Pav-HB-01-28_33Prunus aviumhaplotype
34Pav-HB-01-28_34Prunus aviumhaplotype
35Pav-HB-01-28_35Prunus aviumhaplotype
36Pav-HB-01-28_36Prunus aviumhaplotype
37Pav-HB-01-28_37Prunus aviumhaplotype
38Pav-HB-01-28_38Prunus aviumhaplotype
39Pav-HB-01-28_39Prunus aviumhaplotype
40Pav-HB-01-28_40Prunus aviumhaplotype
41Pav-HB-01-28_41Prunus aviumhaplotype
42Pav-HB-01-28_42Prunus aviumhaplotype
43Pav-HB-01-28_43Prunus aviumhaplotype
44Pav-HB-01-28_44Prunus aviumhaplotype
45Pav-HB-01-28_45Prunus aviumhaplotype
46Pav-HB-01-28_46Prunus aviumhaplotype
47Pav-HB-01-28_47Prunus aviumhaplotype
48Pav-HB-01-28_48Prunus aviumhaplotype
49Pav-HB-01-28_49Prunus aviumhaplotype
50Pav-HB-01-28_50Prunus aviumhaplotype
51Pav-HB-01-28_51Prunus aviumhaplotype
52Pav-HB-01-28_52Prunus aviumhaplotype
53Pav-HB-01-28_53Prunus aviumhaplotype
54Pav-HB-01-28_54Prunus aviumhaplotype
55Pav-HB-01-28_55Prunus aviumhaplotype
56Pav-HB-01-28_56Prunus aviumhaplotype
57Pav-HB-01-28_57Prunus aviumhaplotype
58Pav-HB-01-28_58Prunus aviumhaplotype
59Pav-HB-01-28_59Prunus aviumhaplotype
60Pav-HB-01-28_60Prunus aviumhaplotype
61Pav-HB-01-28_61Prunus aviumhaplotype
62Pav-HB-01-28_62Prunus aviumhaplotype
63Pav-HB-01-28_63Prunus aviumhaplotype
64Pav-HB-01-28_64Prunus aviumhaplotype
65Pav-HB-01-28_65Prunus aviumhaplotype
66Pav-HB-01-28_66Prunus aviumhaplotype
67Pav-HB-01-28_67Prunus aviumhaplotype
68Pav-HB-01-28_68Prunus aviumhaplotype
69Pav-HB-01-28_69Prunus aviumhaplotype
70Pav-HB-01-28_70Prunus aviumhaplotype
71Pav-HB-01-28_71Prunus aviumhaplotype
72Pav-HB-01-28_72Prunus aviumhaplotype
73Pav-HB-01-28_73Prunus aviumhaplotype
74Pav-HB-01-28_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015G1N/A87.26Rsweet_1_33035979View
2Sweet Cherry-RL-F1-2015L1N/A95.62Rsweet_1_33035979View
3Prunus-TE-6K cherry SNP-estimate1N/A47.08RosBREED_snp_sweet_cherry_Pp1_33035979View
4sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A115.9RosBREED_snp_sweet_cherry_Pp1_33035979View
5Sweet Cherry-RosBREED-3.8K-20201N/A96.83RosBREED_snp_sweet_cherry_Pp1_33035979View
6Sweet Cherry-RosBREED-1.6K-20191N/A96.05RosBREED_snp_sweet_cherry_Pp1_33035979View
7Sweet Cherry-RL-Lapins-2013LG01N/A99.3ss490547518View
8Sweet Cherry-RL-F1-2013LG01N/A98.4ss490547518View
9Sour Cherry-M172x25-F1LG1N/A96.05RosBREED_snp_sweet_cherry_Pp1_33035979View
10SourCherry-Montx25-F1LG1N/A96.05RosBREED_snp_sweet_cherry_Pp1_33035979View
11SourCherry-25x25-F1LG1N/A96.05RosBREED_snp_sweet_cherry_Pp1_33035979View
12Sour Cherry-US-F1LG1N/A96.05RosBREED_snp_sweet_cherry_Pp1_33035979View
13SourCherry-RE-F1LG1N/A96.05RosBREED_snp_sweet_cherry_Pp1_33035979View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:33035979..33035979. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:34009820..34009820. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:28563436..28563436. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)