RosBREED_snp_sweet_cherry_Pp1_33883266, RosBREED_snp_sweet_cherry_Pp1_33883266 (genetic_marker) Prunus avium

Marker Overview
NameRosBREED_snp_sweet_cherry_Pp1_33883266
AliasRosBREED_snp_sweet_1_33883266
ss490547676
rs271786813
Rsweet_1_33883266
dbSNP IDss490547676
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_sweet_cherry_Pp1_33883266
TypeSNP
SNP AllelesT/C
SpeciesPrunus avium
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rsweet_1_33883266Rsweet_1_33883266Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp1_33883266RosBREED_snp_sweet_cherry_Pp1_33883266Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp1_33883266RosBREED_snp_sweet_cherry_Pp1_33883266-102.31Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-01-30Pav-HB-01-30Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-01-30_2Prunus aviumhaplotype
3Pav-HB-01-30_3Prunus aviumhaplotype
4Pav-HB-01-30_4Prunus aviumhaplotype
5Pav-HB-01-30_5Prunus aviumhaplotype
6Pav-HB-01-30_6Prunus aviumhaplotype
7Pav-HB-01-30_7Prunus aviumhaplotype
8Pav-HB-01-30_8Prunus aviumhaplotype
9Pav-HB-01-30_9Prunus aviumhaplotype
10Pav-HB-01-30_10Prunus aviumhaplotype
11Pav-HB-01-30_11Prunus aviumhaplotype
12Pav-HB-01-30_12Prunus aviumhaplotype
13Pav-HB-01-30_13Prunus aviumhaplotype
14Pav-HB-01-30_14Prunus aviumhaplotype
15Pav-HB-01-30_15Prunus aviumhaplotype
16Pav-HB-01-30_16Prunus aviumhaplotype
17Pav-HB-01-30_17Prunus aviumhaplotype
18Pav-HB-01-30_18Prunus aviumhaplotype
19Pav-HB-01-30_19Prunus aviumhaplotype
20Pav-HB-01-30_20Prunus aviumhaplotype
21Pav-HB-01-30_21Prunus aviumhaplotype
22Pav-HB-01-30_22Prunus aviumhaplotype
23Pav-HB-01-30_23Prunus aviumhaplotype
24Pav-HB-01-30_24Prunus aviumhaplotype
25Pav-HB-01-30_25Prunus aviumhaplotype
26Pav-HB-01-30_26Prunus aviumhaplotype
27Pav-HB-01-30_27Prunus aviumhaplotype
28Pav-HB-01-30_28Prunus aviumhaplotype
29Pav-HB-01-30_29Prunus aviumhaplotype
30Pav-HB-01-30_30Prunus aviumhaplotype
31Pav-HB-01-30_31Prunus aviumhaplotype
32Pav-HB-01-30_32Prunus aviumhaplotype
33Pav-HB-01-30_33Prunus aviumhaplotype
34Pav-HB-01-30_34Prunus aviumhaplotype
35Pav-HB-01-30_35Prunus aviumhaplotype
36Pav-HB-01-30_36Prunus aviumhaplotype
37Pav-HB-01-30_37Prunus aviumhaplotype
38Pav-HB-01-30_38Prunus aviumhaplotype
39Pav-HB-01-30_39Prunus aviumhaplotype
40Pav-HB-01-30_40Prunus aviumhaplotype
41Pav-HB-01-30_41Prunus aviumhaplotype
42Pav-HB-01-30_42Prunus aviumhaplotype
43Pav-HB-01-30_43Prunus aviumhaplotype
44Pav-HB-01-30_44Prunus aviumhaplotype
45Pav-HB-01-30_45Prunus aviumhaplotype
46Pav-HB-01-30_46Prunus aviumhaplotype
47Pav-HB-01-30_47Prunus aviumhaplotype
48Pav-HB-01-30_48Prunus aviumhaplotype
49Pav-HB-01-30_49Prunus aviumhaplotype
50Pav-HB-01-30_50Prunus aviumhaplotype
51Pav-HB-01-30_51Prunus aviumhaplotype
52Pav-HB-01-30_52Prunus aviumhaplotype
53Pav-HB-01-30_53Prunus aviumhaplotype
54Pav-HB-01-30_54Prunus aviumhaplotype
55Pav-HB-01-30_55Prunus aviumhaplotype
56Pav-HB-01-30_56Prunus aviumhaplotype
57Pav-HB-01-30_57Prunus aviumhaplotype
58Pav-HB-01-30_58Prunus aviumhaplotype
59Pav-HB-01-30_59Prunus aviumhaplotype
60Pav-HB-01-30_60Prunus aviumhaplotype
61Pav-HB-01-30_61Prunus aviumhaplotype
62Pav-HB-01-30_62Prunus aviumhaplotype
63Pav-HB-01-30_63Prunus aviumhaplotype
64Pav-HB-01-30_64Prunus aviumhaplotype
65Pav-HB-01-30_65Prunus aviumhaplotype
66Pav-HB-01-30_66Prunus aviumhaplotype
67Pav-HB-01-30_67Prunus aviumhaplotype
68Pav-HB-01-30_68Prunus aviumhaplotype
69Pav-HB-01-30_69Prunus aviumhaplotype
70Pav-HB-01-30_70Prunus aviumhaplotype
71Pav-HB-01-30_71Prunus aviumhaplotype
72Pav-HB-01-30_72Prunus aviumhaplotype
73Pav-HB-01-30_73Prunus aviumhaplotype
74Pav-HB-01-30_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015G1N/A93.12Rsweet_1_33883266View
2Prunus-TE-6K cherry SNP-estimate1N/A49.16RosBREED_snp_sweet_cherry_Pp1_33883266View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A124.15RosBREED_snp_sweet_cherry_Pp1_33883266View
4Sweet Cherry-V-F1LG1N/A109.51RosBREED_snp_sweet_cherry_Pp1_33883266View
5Sweet Cherry-VxC-F1LG1N/A104.31RosBREED_snp_sweet_cherry_Pp1_33883266View
6Sweet Cherry-BCxBC-F2LG1N/A87.31RosBREED_snp_sweet_cherry_Pp1_33883266View
7Sweet Cherry-RosBREED-3.8K-20201N/A103.09RosBREED_snp_sweet_cherry_Pp1_33883266View
8Sweet Cherry-RosBREED-1.6K-20191N/A102.31RosBREED_snp_sweet_cherry_Pp1_33883266View
9Sweet Cherry-AxS-F11N/A132.14RosBREED_snp_sweet_cherry_Pp1_33883266View
10Sweet Cherry-V-F1-6+9K_array1N/A97.11RosBREED_snp_sweet_cherry_Pp1_33883266View
11Sweet Cherry-VxC-F1-6+9K_array1N/A127.71RosBREED_snp_sweet_cherry_Pp1_33883266View
12Sour Cherry-M172x25-F1LG1N/A102.31RosBREED_snp_sweet_cherry_Pp1_33883266View
13SourCherry-Montx25-F1LG1N/A102.31RosBREED_snp_sweet_cherry_Pp1_33883266View
14SourCherry-25x25-F1LG1N/A102.31RosBREED_snp_sweet_cherry_Pp1_33883266View
15Sour Cherry-US-F1LG1N/A102.31RosBREED_snp_sweet_cherry_Pp1_33883266View
16SourCherry-RE-F1LG1N/A102.31RosBREED_snp_sweet_cherry_Pp1_33883266View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:33883266..33883266. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:34857107..34857107. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:29516158..29516158. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)