RosCOS1201-071_snp_sweet_cherry_Pp1_00450381, RosCOS1201-071_snp_sweet_cherry_Pp1_00450381 (genetic_marker) Prunus avium

Marker Overview
NameRosCOS1201-071_snp_sweet_cherry_Pp1_00450381
AliasRosCOS1201-071_snp_sweet_1_00450381
ss490558959
rs271790245
R1201-071_1_00450381
dbSNP IDss490558959
SNP Array ID
IRSC 6K SNP array for cherry:RosCOS1201-071_snp_sweet_cherry_Pp1_00450381
TypeSNP
SNP AllelesT/G
SpeciesPrunus avium
Publication[view all]
Associated WithROSC_FMLY_CSA1_1201
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

This genetic_marker is associated with the following contig feature(s):

Feature NameUnique NameSpeciesType
ROSC_FMLY_CSA1_1201ROSC_FMLY_CSA1_1201Rosaceae Family Genera sp.contig


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
ss490558959ss490558959Prunus aviummarker_locus
R1201-071_1_00450381R1201-071_1_00450381Prunus aviummarker_locus
RosCOS1201-071_snp_sweet_cherry_Pp1_00450381RosCOS1201-071_snp_sweet_cherry_Pp1_00450381Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-01-1Pav-HB-01-1Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-01-1_2Prunus aviumhaplotype
3Pav-HB-01-1_3Prunus aviumhaplotype
4Pav-HB-01-1_4Prunus aviumhaplotype
5Pav-HB-01-1_5Prunus aviumhaplotype
6Pav-HB-01-1_6Prunus aviumhaplotype
7Pav-HB-01-1_7Prunus aviumhaplotype
8Pav-HB-01-1_8Prunus aviumhaplotype
9Pav-HB-01-1_9Prunus aviumhaplotype
10Pav-HB-01-1_10Prunus aviumhaplotype
11Pav-HB-01-1_11Prunus aviumhaplotype
12Pav-HB-01-1_12Prunus aviumhaplotype
13Pav-HB-01-1_13Prunus aviumhaplotype
14Pav-HB-01-1_14Prunus aviumhaplotype
15Pav-HB-01-1_15Prunus aviumhaplotype
16Pav-HB-01-1_16Prunus aviumhaplotype
17Pav-HB-01-1_17Prunus aviumhaplotype
18Pav-HB-01-1_18Prunus aviumhaplotype
19Pav-HB-01-1_19Prunus aviumhaplotype
20Pav-HB-01-1_20Prunus aviumhaplotype
21Pav-HB-01-1_21Prunus aviumhaplotype
22Pav-HB-01-1_22Prunus aviumhaplotype
23Pav-HB-01-1_23Prunus aviumhaplotype
24Pav-HB-01-1_24Prunus aviumhaplotype
25Pav-HB-01-1_25Prunus aviumhaplotype
26Pav-HB-01-1_26Prunus aviumhaplotype
27Pav-HB-01-1_27Prunus aviumhaplotype
28Pav-HB-01-1_28Prunus aviumhaplotype
29Pav-HB-01-1_29Prunus aviumhaplotype
30Pav-HB-01-1_30Prunus aviumhaplotype
31Pav-HB-01-1_31Prunus aviumhaplotype
32Pav-HB-01-1_32Prunus aviumhaplotype
33Pav-HB-01-1_33Prunus aviumhaplotype
34Pav-HB-01-1_34Prunus aviumhaplotype
35Pav-HB-01-1_35Prunus aviumhaplotype
36Pav-HB-01-1_36Prunus aviumhaplotype
37Pav-HB-01-1_37Prunus aviumhaplotype
38Pav-HB-01-1_38Prunus aviumhaplotype
39Pav-HB-01-1_39Prunus aviumhaplotype
40Pav-HB-01-1_40Prunus aviumhaplotype
41Pav-HB-01-1_41Prunus aviumhaplotype
42Pav-HB-01-1_42Prunus aviumhaplotype
43Pav-HB-01-1_43Prunus aviumhaplotype
44Pav-HB-01-1_44Prunus aviumhaplotype
45Pav-HB-01-1_45Prunus aviumhaplotype
46Pav-HB-01-1_46Prunus aviumhaplotype
47Pav-HB-01-1_47Prunus aviumhaplotype
48Pav-HB-01-1_48Prunus aviumhaplotype
49Pav-HB-01-1_49Prunus aviumhaplotype
50Pav-HB-01-1_50Prunus aviumhaplotype
51Pav-HB-01-1_51Prunus aviumhaplotype
52Pav-HB-01-1_52Prunus aviumhaplotype
53Pav-HB-01-1_53Prunus aviumhaplotype
54Pav-HB-01-1_54Prunus aviumhaplotype
55Pav-HB-01-1_55Prunus aviumhaplotype
56Pav-HB-01-1_56Prunus aviumhaplotype
57Pav-HB-01-1_57Prunus aviumhaplotype
58Pav-HB-01-1_58Prunus aviumhaplotype
59Pav-HB-01-1_59Prunus aviumhaplotype
60Pav-HB-01-1_60Prunus aviumhaplotype
61Pav-HB-01-1_61Prunus aviumhaplotype
62Pav-HB-01-1_62Prunus aviumhaplotype
63Pav-HB-01-1_63Prunus aviumhaplotype
64Pav-HB-01-1_64Prunus aviumhaplotype
65Pav-HB-01-1_65Prunus aviumhaplotype
66Pav-HB-01-1_66Prunus aviumhaplotype
67Pav-HB-01-1_67Prunus aviumhaplotype
68Pav-HB-01-1_68Prunus aviumhaplotype
69Pav-HB-01-1_69Prunus aviumhaplotype
70Pav-HB-01-1_70Prunus aviumhaplotype
71Pav-HB-01-1_71Prunus aviumhaplotype
72Pav-HB-01-1_72Prunus aviumhaplotype
73Pav-HB-01-1_73Prunus aviumhaplotype
74Pav-HB-01-1_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-BTK-Black Tartarian-2013LG01N/A0ss490558959View
2Sweet Cherry-RL-Regina-2013LG01N/A0ss490558959View
3Sweet Cherry-BTK-F1-2013LG01N/A6.6ss490558959View
4Sweet Cherry-RL-F1-2013LG01N/A0ss490558959View
5Sweet Cherry-RG-F1-2015R1N/A0R1201-071_1_00450381View
6Sweet Cherry-RL-F1-2015R1N/A0R1201-071_1_00450381View
7Sweet Cherry-V-F1LG1N/A0.63RosCOS1201-071_snp_sweet_cherry_Pp1_00450381View
8Prunus-TE-6K cherry SNP-estimate1N/A1.01RosCOS1201-071_snp_sweet_cherry_Pp1_00450381View
9sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A0RosCOS1201-071_snp_sweet_cherry_Pp1_00450381View
10Sweet Cherry-VxC-F1LG1N/A0.64RosCOS1201-071_snp_sweet_cherry_Pp1_00450381View
11Sweet Cherry-RL-F1-2014R1N/A0.8RosCOS1201-071_snp_sweet_cherry_Pp1_00450381View
12Sweet Cherry-RG-F1-2014R1N/A0RosCOS1201-071_snp_sweet_cherry_Pp1_00450381View
13Sweet Cherry-V-F1-6+9K_array1N/A0.64RosCOS1201-071_snp_sweet_cherry_Pp1_00450381View
14Sour Cherry-M172x25-F1LG1N/A0RosCOS1201-071_snp_sweet_cherry_Pp1_00450381View
15SourCherry-25x25-F1LG1N/A0RosCOS1201-071_snp_sweet_cherry_Pp1_00450381View
16Sour Cherry-US-F1LG1N/A0RosCOS1201-071_snp_sweet_cherry_Pp1_00450381View
17SourCherry-RE-F1LG1N/A0RosCOS1201-071_snp_sweet_cherry_Pp1_00450381View
18SweetCherry-FX-F1-XX1N/A0RosCOS1201-071_snp_sweet_cherry_Pp1_00450381View
19Sweet Cherry-RosBREED-1.6K-20191N/A0RosCOS1201-071_snp_sweet_cherry_Pp1_00450381View
20Sweet Cherry-RosBREED-3.8K-20201N/A0.78RosCOS1201-071_snp_sweet_cherry_Pp1_00450381View
21Sweet Cherry-VxC-F1-6+9K_array1N/A4.82RosCOS1201-071_snp_sweet_cherry_Pp1_00450381View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:450381..450381. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:450500..450500. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:521250..521250. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)