RosCOS1405-103_snp_sweet_cherry_Pp1_43353354, RosCOS1405-103_snp_sweet_cherry_Pp1_43353354 (genetic_marker) Prunus avium

Marker Overview
NameRosCOS1405-103_snp_sweet_cherry_Pp1_43353354
AliasRosCOS1405-103_snp_sweet_1_43353354
ss490559070
rs271790283
R1405-103_1_43353354
dbSNP IDss490559070
SNP Array ID
IRSC 6K SNP array for cherry:RosCOS1405-103_snp_sweet_cherry_Pp1_43353354
TypeSNP
SNP AllelesA/G
SpeciesPrunus avium
Publication[view all]
Associated WithROSC_FMLY_CSA1_1405
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

This genetic_marker is associated with the following contig feature(s):

Feature NameUnique NameSpeciesType
ROSC_FMLY_CSA1_1405ROSC_FMLY_CSA1_1405Rosaceae Family Genera sp.contig


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
R1405-103_1_43353354R1405-103_1_43353354Prunus aviummarker_locus
RosCOS1405-103_snp_sweet_cherry_Pp1_43353354RosCOS1405-103_snp_sweet_cherry_Pp1_43353354Prunus aviummarker_locus
ss490559070ss490559070Prunus aviummarker_locus
RosCOS1405-103_snp_sweet_cherry_Pp1_43353354RosCOS1405-103_snp_sweet_cherry_Pp1_43353354-156.569Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-01-46Pav-HB-01-46Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-01-46_2Prunus aviumhaplotype
3Pav-HB-01-46_3Prunus aviumhaplotype
4Pav-HB-01-46_4Prunus aviumhaplotype
5Pav-HB-01-46_5Prunus aviumhaplotype
6Pav-HB-01-46_6Prunus aviumhaplotype
7Pav-HB-01-46_7Prunus aviumhaplotype
8Pav-HB-01-46_8Prunus aviumhaplotype
9Pav-HB-01-46_9Prunus aviumhaplotype
10Pav-HB-01-46_10Prunus aviumhaplotype
11Pav-HB-01-46_11Prunus aviumhaplotype
12Pav-HB-01-46_12Prunus aviumhaplotype
13Pav-HB-01-46_13Prunus aviumhaplotype
14Pav-HB-01-46_14Prunus aviumhaplotype
15Pav-HB-01-46_15Prunus aviumhaplotype
16Pav-HB-01-46_16Prunus aviumhaplotype
17Pav-HB-01-46_17Prunus aviumhaplotype
18Pav-HB-01-46_18Prunus aviumhaplotype
19Pav-HB-01-46_19Prunus aviumhaplotype
20Pav-HB-01-46_20Prunus aviumhaplotype
21Pav-HB-01-46_21Prunus aviumhaplotype
22Pav-HB-01-46_22Prunus aviumhaplotype
23Pav-HB-01-46_23Prunus aviumhaplotype
24Pav-HB-01-46_24Prunus aviumhaplotype
25Pav-HB-01-46_25Prunus aviumhaplotype
26Pav-HB-01-46_26Prunus aviumhaplotype
27Pav-HB-01-46_27Prunus aviumhaplotype
28Pav-HB-01-46_28Prunus aviumhaplotype
29Pav-HB-01-46_29Prunus aviumhaplotype
30Pav-HB-01-46_30Prunus aviumhaplotype
31Pav-HB-01-46_31Prunus aviumhaplotype
32Pav-HB-01-46_32Prunus aviumhaplotype
33Pav-HB-01-46_33Prunus aviumhaplotype
34Pav-HB-01-46_34Prunus aviumhaplotype
35Pav-HB-01-46_35Prunus aviumhaplotype
36Pav-HB-01-46_36Prunus aviumhaplotype
37Pav-HB-01-46_37Prunus aviumhaplotype
38Pav-HB-01-46_38Prunus aviumhaplotype
39Pav-HB-01-46_39Prunus aviumhaplotype
40Pav-HB-01-46_40Prunus aviumhaplotype
41Pav-HB-01-46_41Prunus aviumhaplotype
42Pav-HB-01-46_42Prunus aviumhaplotype
43Pav-HB-01-46_43Prunus aviumhaplotype
44Pav-HB-01-46_44Prunus aviumhaplotype
45Pav-HB-01-46_45Prunus aviumhaplotype
46Pav-HB-01-46_46Prunus aviumhaplotype
47Pav-HB-01-46_47Prunus aviumhaplotype
48Pav-HB-01-46_48Prunus aviumhaplotype
49Pav-HB-01-46_49Prunus aviumhaplotype
50Pav-HB-01-46_50Prunus aviumhaplotype
51Pav-HB-01-46_51Prunus aviumhaplotype
52Pav-HB-01-46_52Prunus aviumhaplotype
53Pav-HB-01-46_53Prunus aviumhaplotype
54Pav-HB-01-46_54Prunus aviumhaplotype
55Pav-HB-01-46_55Prunus aviumhaplotype
56Pav-HB-01-46_56Prunus aviumhaplotype
57Pav-HB-01-46_57Prunus aviumhaplotype
58Pav-HB-01-46_58Prunus aviumhaplotype
59Pav-HB-01-46_59Prunus aviumhaplotype
60Pav-HB-01-46_60Prunus aviumhaplotype
61Pav-HB-01-46_61Prunus aviumhaplotype
62Pav-HB-01-46_62Prunus aviumhaplotype
63Pav-HB-01-46_63Prunus aviumhaplotype
64Pav-HB-01-46_64Prunus aviumhaplotype
65Pav-HB-01-46_65Prunus aviumhaplotype
66Pav-HB-01-46_66Prunus aviumhaplotype
67Pav-HB-01-46_67Prunus aviumhaplotype
68Pav-HB-01-46_68Prunus aviumhaplotype
69Pav-HB-01-46_69Prunus aviumhaplotype
70Pav-HB-01-46_70Prunus aviumhaplotype
71Pav-HB-01-46_71Prunus aviumhaplotype
72Pav-HB-01-46_72Prunus aviumhaplotype
73Pav-HB-01-46_73Prunus aviumhaplotype
74Pav-HB-01-46_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015R1N/A115.21R1405-103_1_43353354View
2Prunus-TE-6K cherry SNP-estimate1N/A74.96RosCOS1405-103_snp_sweet_cherry_Pp1_43353354View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A175.39RosCOS1405-103_snp_sweet_cherry_Pp1_43353354View
4Sweet Cherry-V-F1LG1N/A167.27RosCOS1405-103_snp_sweet_cherry_Pp1_43353354View
5Sweet Cherry-VxC-F1LG1N/A147.75RosCOS1405-103_snp_sweet_cherry_Pp1_43353354View
6Sweet Cherry-BCxBC-F2LG1N/A120.94RosCOS1405-103_snp_sweet_cherry_Pp1_43353354View
7Sweet Cherry-RG-F1-2014R1N/A124.2RosCOS1405-103_snp_sweet_cherry_Pp1_43353354View
8Sweet Cherry-RosBREED-1.6K-20191N/A137.2RosCOS1405-103_snp_sweet_cherry_Pp1_43353354View
9Sweet Cherry-RosBREED-3.8K-20201N/A137.98RosCOS1405-103_snp_sweet_cherry_Pp1_43353354View
10Sweet Cherry-A-F11N/A196.15RosCOS1405-103_snp_sweet_cherry_Pp1_43353354View
11Sweet Cherry-AxS-F11N/A183.19RosCOS1405-103_snp_sweet_cherry_Pp1_43353354View
12Sweet Cherry-V-F1-6+9K_array1N/A140.34RosCOS1405-103_snp_sweet_cherry_Pp1_43353354View
13Sweet Cherry-VxC-F1-6+9K_array1N/A170.95RosCOS1405-103_snp_sweet_cherry_Pp1_43353354View
14Sweet Cherry-BTK-Black Tartarian-2013LG01N/A185.9ss490559070View
15Sweet Cherry-BTK-F1-2013LG01N/A168.3ss490559070View
16SweetCherry-FX-F1-FercerF1N/A156.57RosCOS1405-103_snp_sweet_cherry_Pp1_43353354View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:43353354..43353354. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:46462602..46462602. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)