RosCOS1618-422_snp_sweet_cherry_Pp5_13093085, RosCOS1618-422_snp_sweet_cherry_Pp5_13093085 (genetic_marker) Prunus avium

Marker Overview
NameRosCOS1618-422_snp_sweet_cherry_Pp5_13093085
AliasRosCOS1618-422_snp_sweet_5_13093085
ss490559183
rs271790322
R1618-422_5_13093085
dbSNP IDss490559183
SNP Array ID
IRSC 6K SNP array for cherry:RosCOS1618-422_snp_sweet_cherry_Pp5_13093085
TypeSNP
SNP AllelesT/C
SpeciesPrunus avium
Publication[view all]
Associated WithROSC_FMLY_CSA1_1618
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

This genetic_marker is associated with the following contig feature(s):

Feature NameUnique NameSpeciesType
ROSC_FMLY_CSA1_1618ROSC_FMLY_CSA1_1618Rosaceae Family Genera sp.contig


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
R1618-422_5_13093085R1618-422_5_13093085Prunus aviummarker_locus
RosCOS1618-422_snp_sweet_cherry_Pp5_13093085RosCOS1618-422_snp_sweet_cherry_Pp5_13093085Prunus aviummarker_locus
ss490559183ss490559183Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-05-10Pav-HB-05-10Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-05-10_2Prunus aviumhaplotype
3Pav-HB-05-10_3Prunus aviumhaplotype
4Pav-HB-05-10_4Prunus aviumhaplotype
5Pav-HB-05-10_5Prunus aviumhaplotype
6Pav-HB-05-10_6Prunus aviumhaplotype
7Pav-HB-05-10_7Prunus aviumhaplotype
8Pav-HB-05-10_8Prunus aviumhaplotype
9Pav-HB-05-10_9Prunus aviumhaplotype
10Pav-HB-05-10_10Prunus aviumhaplotype
11Pav-HB-05-10_11Prunus aviumhaplotype
12Pav-HB-05-10_12Prunus aviumhaplotype
13Pav-HB-05-10_13Prunus aviumhaplotype
14Pav-HB-05-10_14Prunus aviumhaplotype
15Pav-HB-05-10_15Prunus aviumhaplotype
16Pav-HB-05-10_16Prunus aviumhaplotype
17Pav-HB-05-10_17Prunus aviumhaplotype
18Pav-HB-05-10_18Prunus aviumhaplotype
19Pav-HB-05-10_19Prunus aviumhaplotype
20Pav-HB-05-10_20Prunus aviumhaplotype
21Pav-HB-05-10_21Prunus aviumhaplotype
22Pav-HB-05-10_22Prunus aviumhaplotype
23Pav-HB-05-10_23Prunus aviumhaplotype
24Pav-HB-05-10_24Prunus aviumhaplotype
25Pav-HB-05-10_25Prunus aviumhaplotype
26Pav-HB-05-10_26Prunus aviumhaplotype
27Pav-HB-05-10_27Prunus aviumhaplotype
28Pav-HB-05-10_28Prunus aviumhaplotype
29Pav-HB-05-10_29Prunus aviumhaplotype
30Pav-HB-05-10_30Prunus aviumhaplotype
31Pav-HB-05-10_31Prunus aviumhaplotype
32Pav-HB-05-10_32Prunus aviumhaplotype
33Pav-HB-05-10_33Prunus aviumhaplotype
34Pav-HB-05-10_34Prunus aviumhaplotype
35Pav-HB-05-10_35Prunus aviumhaplotype
36Pav-HB-05-10_36Prunus aviumhaplotype
37Pav-HB-05-10_37Prunus aviumhaplotype
38Pav-HB-05-10_38Prunus aviumhaplotype
39Pav-HB-05-10_39Prunus aviumhaplotype
40Pav-HB-05-10_40Prunus aviumhaplotype
41Pav-HB-05-10_41Prunus aviumhaplotype
42Pav-HB-05-10_42Prunus aviumhaplotype
43Pav-HB-05-10_43Prunus aviumhaplotype
44Pav-HB-05-10_44Prunus aviumhaplotype
45Pav-HB-05-10_45Prunus aviumhaplotype
46Pav-HB-05-10_46Prunus aviumhaplotype
47Pav-HB-05-10_47Prunus aviumhaplotype
48Pav-HB-05-10_48Prunus aviumhaplotype
49Pav-HB-05-10_49Prunus aviumhaplotype
50Pav-HB-05-10_50Prunus aviumhaplotype
51Pav-HB-05-10_51Prunus aviumhaplotype
52Pav-HB-05-10_52Prunus aviumhaplotype
53Pav-HB-05-10_53Prunus aviumhaplotype
54Pav-HB-05-10_54Prunus aviumhaplotype
55Pav-HB-05-10_55Prunus aviumhaplotype
56Pav-HB-05-10_56Prunus aviumhaplotype
57Pav-HB-05-10_57Prunus aviumhaplotype
58Pav-HB-05-10_58Prunus aviumhaplotype
59Pav-HB-05-10_59Prunus aviumhaplotype
60Pav-HB-05-10_60Prunus aviumhaplotype
61Pav-HB-05-10_61Prunus aviumhaplotype
62Pav-HB-05-10_62Prunus aviumhaplotype
63Pav-HB-05-10_63Prunus aviumhaplotype
64Pav-HB-05-10_64Prunus aviumhaplotype
65Pav-HB-05-10_65Prunus aviumhaplotype
66Pav-HB-05-10_66Prunus aviumhaplotype
67Pav-HB-05-10_67Prunus aviumhaplotype
68Pav-HB-05-10_68Prunus aviumhaplotype
69Pav-HB-05-10_69Prunus aviumhaplotype
70Pav-HB-05-10_70Prunus aviumhaplotype
71Pav-HB-05-10_71Prunus aviumhaplotype
72Pav-HB-05-10_72Prunus aviumhaplotype
73Pav-HB-05-10_73Prunus aviumhaplotype
74Pav-HB-05-10_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RL-F1-2015L5N/A38.45R1618-422_5_13093085View
2Prunus-TE-6K cherry SNP-estimate5N/A30.44RosCOS1618-422_snp_sweet_cherry_Pp5_13093085View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate5N/A53.7RosCOS1618-422_snp_sweet_cherry_Pp5_13093085View
4Sweet Cherry-C-F1LG5N/A54.3RosCOS1618-422_snp_sweet_cherry_Pp5_13093085View
5Sweet Cherry-VxC-F1LG5N/A54.67RosCOS1618-422_snp_sweet_cherry_Pp5_13093085View
6Sweet Cherry-CxC-F2LG5N/A49.6RosCOS1618-422_snp_sweet_cherry_Pp5_13093085View
7Sweet Cherry-RL-F1-2014L5N/A40.1RosCOS1618-422_snp_sweet_cherry_Pp5_13093085View
8Sweet Cherry-RosBREED-1.6K-20195N/A34.6RosCOS1618-422_snp_sweet_cherry_Pp5_13093085View
9Sweet Cherry-RosBREED-3.8K-20205N/A34.6RosCOS1618-422_snp_sweet_cherry_Pp5_13093085View
10Sweet Cherry-AxS-F15N/A46.06RosCOS1618-422_snp_sweet_cherry_Pp5_13093085View
11Sweet Cherry-C-F1-6+9K_array5N/A60.02RosCOS1618-422_snp_sweet_cherry_Pp5_13093085View
12Sweet Cherry-VxC-F1-6+9K_array5N/A53.48RosCOS1618-422_snp_sweet_cherry_Pp5_13093085View
13Sweet Cherry-RL-Lapins-2013LG05N/A38.2ss490559183View
14Sweet Cherry-BTK-F1-2013LG05N/A41.1ss490559183View
15Sweet Cherry-RL-F1-2013LG05N/A38.6ss490559183View
Alignments
Feature NameTypeLocationAnalysis
scaffold_5 supercontig scaffold_5:13093085..13093085. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp05 chromosome Pp05:13087855..13087855. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr5 chromosome PAV_r1.0chr5:11084169..11084169. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)