RosBREED_snp_sweet_cherry_Pp1_05564866, RosBREED_snp_sweet_cherry_Pp1_05564866 (genetic_marker) Prunus avium

Marker Overview
NameRosBREED_snp_sweet_cherry_Pp1_05564866
Aliasrs271786347
ss490545817
dbSNP IDss490545817
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_sweet_cherry_Pp1_05564866
TypeSNP
SNP AllelesA/C
SpeciesPrunus avium
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
74Pav-HB-01-2_74Prunus aviumhaplotype
73Pav-HB-01-2_73Prunus aviumhaplotype
72Pav-HB-01-2_72Prunus aviumhaplotype
71Pav-HB-01-2_71Prunus aviumhaplotype
70Pav-HB-01-2_70Prunus aviumhaplotype
69Pav-HB-01-2_69Prunus aviumhaplotype
68Pav-HB-01-2_68Prunus aviumhaplotype
67Pav-HB-01-2_67Prunus aviumhaplotype
66Pav-HB-01-2_66Prunus aviumhaplotype
65Pav-HB-01-2_65Prunus aviumhaplotype
64Pav-HB-01-2_64Prunus aviumhaplotype
63Pav-HB-01-2_63Prunus aviumhaplotype
62Pav-HB-01-2_62Prunus aviumhaplotype
61Pav-HB-01-2_61Prunus aviumhaplotype
60Pav-HB-01-2_60Prunus aviumhaplotype
59Pav-HB-01-2_59Prunus aviumhaplotype
58Pav-HB-01-2_58Prunus aviumhaplotype
57Pav-HB-01-2_57Prunus aviumhaplotype
56Pav-HB-01-2_56Prunus aviumhaplotype
55Pav-HB-01-2_55Prunus aviumhaplotype
54Pav-HB-01-2_54Prunus aviumhaplotype
53Pav-HB-01-2_53Prunus aviumhaplotype
52Pav-HB-01-2_52Prunus aviumhaplotype
51Pav-HB-01-2_51Prunus aviumhaplotype
50Pav-HB-01-2_50Prunus aviumhaplotype
49Pav-HB-01-2_49Prunus aviumhaplotype
48Pav-HB-01-2_48Prunus aviumhaplotype
47Pav-HB-01-2_47Prunus aviumhaplotype
46Pav-HB-01-2_46Prunus aviumhaplotype
45Pav-HB-01-2_45Prunus aviumhaplotype
44Pav-HB-01-2_44Prunus aviumhaplotype
43Pav-HB-01-2_43Prunus aviumhaplotype
42Pav-HB-01-2_42Prunus aviumhaplotype
41Pav-HB-01-2_41Prunus aviumhaplotype
40Pav-HB-01-2_40Prunus aviumhaplotype
39Pav-HB-01-2_39Prunus aviumhaplotype
38Pav-HB-01-2_38Prunus aviumhaplotype
37Pav-HB-01-2_37Prunus aviumhaplotype
36Pav-HB-01-2_36Prunus aviumhaplotype
35Pav-HB-01-2_35Prunus aviumhaplotype
34Pav-HB-01-2_34Prunus aviumhaplotype
33Pav-HB-01-2_33Prunus aviumhaplotype
32Pav-HB-01-2_32Prunus aviumhaplotype
31Pav-HB-01-2_31Prunus aviumhaplotype
30Pav-HB-01-2_30Prunus aviumhaplotype
29Pav-HB-01-2_29Prunus aviumhaplotype
28Pav-HB-01-2_28Prunus aviumhaplotype
27Pav-HB-01-2_27Prunus aviumhaplotype
26Pav-HB-01-2_26Prunus aviumhaplotype
25Pav-HB-01-2_25Prunus aviumhaplotype
24Pav-HB-01-2_24Prunus aviumhaplotype
23Pav-HB-01-2_23Prunus aviumhaplotype
22Pav-HB-01-2_22Prunus aviumhaplotype
21Pav-HB-01-2_21Prunus aviumhaplotype
20Pav-HB-01-2_20Prunus aviumhaplotype
19Pav-HB-01-2_19Prunus aviumhaplotype
18Pav-HB-01-2_18Prunus aviumhaplotype
17Pav-HB-01-2_17Prunus aviumhaplotype
16Pav-HB-01-2_16Prunus aviumhaplotype
15Pav-HB-01-2_15Prunus aviumhaplotype
14Pav-HB-01-2_14Prunus aviumhaplotype
13Pav-HB-01-2_13Prunus aviumhaplotype
12Pav-HB-01-2_12Prunus aviumhaplotype
11Pav-HB-01-2_11Prunus aviumhaplotype
10Pav-HB-01-2_10Prunus aviumhaplotype
9Pav-HB-01-2_9Prunus aviumhaplotype
8Pav-HB-01-2_8Prunus aviumhaplotype
7Pav-HB-01-2_7Prunus aviumhaplotype
6Pav-HB-01-2_6Prunus aviumhaplotype
5Pav-HB-01-2_5Prunus aviumhaplotype
4Pav-HB-01-2_4Prunus aviumhaplotype
3Pav-HB-01-2_3Prunus aviumhaplotype
2Pav-HB-01-2_2Prunus aviumhaplotype


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-01-2Pav-HB-01-2Prunus aviumhaplotype_block


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREED_snp_sweet_cherry_Pp1_05564866RosBREED_snp_sweet_cherry_Pp1_05564866Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp1_05564866RosBREED_snp_sweet_cherry_Pp1_05564866-12.49Prunus aviummarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RosBREED-3.8K-20201N/A13.27RosBREED_snp_sweet_cherry_Pp1_05564866View
2Sweet Cherry-RosBREED-1.6K-20191N/A12.49RosBREED_snp_sweet_cherry_Pp1_05564866View
3Prunus-TE-6K cherry SNP-estimate1N/A9.28RosBREED_snp_sweet_cherry_Pp1_05564866View
4sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A24.46RosBREED_snp_sweet_cherry_Pp1_05564866View
5Sweet Cherry-C-F1LG1N/A0RosBREED_snp_sweet_cherry_Pp1_05564866View
6Sweet Cherry-VxC-F1LG1N/A17.08RosBREED_snp_sweet_cherry_Pp1_05564866View
7Sweet Cherry-CxC-F2LG1N/A0.53RosBREED_snp_sweet_cherry_Pp1_05564866View
8Sour Cherry-M172x25-F1LG1N/A12.49RosBREED_snp_sweet_cherry_Pp1_05564866-12.49View
9SourCherry-Montx25-F1LG1N/A12.49RosBREED_snp_sweet_cherry_Pp1_05564866-12.49View
10SourCherry-25x25-F1LG1N/A12.49RosBREED_snp_sweet_cherry_Pp1_05564866-12.49View
11Sour Cherry-US-F1LG1N/A12.49RosBREED_snp_sweet_cherry_Pp1_05564866-12.49View
12SourCherry-RE-F1LG1N/A12.49RosBREED_snp_sweet_cherry_Pp1_05564866-12.49View
Alignments
Feature NameTypeLocationAnalysis
PAV_r1.0chr4 chromosome PAV_r1.0chr4:20239139... Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)
scaffold_1 supercontig scaffold_1:5564866..5564866. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:6014225..6014225. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)