RosCOS1674-276_snp_sweet_cherry_Pp7_08149634, RosCOS1674-276_snp_sweet_cherry_Pp7_08149634 (genetic_marker) Prunus avium

Marker Overview
NameRosCOS1674-276_snp_sweet_cherry_Pp7_08149634
AliasRosCOS1674-276_snp_sweet_7_08149634
ss490559192
rs271790325
R1674-276_7_08149634
dbSNP IDss490559192
SNP Array ID
IRSC 6K SNP array for cherry:RosCOS1674-276_snp_sweet_cherry_Pp7_08149634
TypeSNP
SNP Alleles-/T
SpeciesPrunus avium
Publication[view all]
Associated WithROSC_FMLY_CSA1_1674
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

This genetic_marker is associated with the following contig feature(s):

Feature NameUnique NameSpeciesType
ROSC_FMLY_CSA1_1674ROSC_FMLY_CSA1_1674Rosaceae Family Genera sp.contig


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
R1674-276_7_08149634R1674-276_7_08149634Prunus aviummarker_locus
RosCOS1674-276_snp_sweet_cherry_Pp7_08149634RosCOS1674-276_snp_sweet_cherry_Pp7_08149634Prunus aviummarker_locus
ss490559192ss490559192Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-07-4Pav-HB-07-4Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-07-4_2Prunus aviumhaplotype
3Pav-HB-07-4_3Prunus aviumhaplotype
4Pav-HB-07-4_4Prunus aviumhaplotype
5Pav-HB-07-4_5Prunus aviumhaplotype
6Pav-HB-07-4_6Prunus aviumhaplotype
7Pav-HB-07-4_7Prunus aviumhaplotype
8Pav-HB-07-4_8Prunus aviumhaplotype
9Pav-HB-07-4_9Prunus aviumhaplotype
10Pav-HB-07-4_10Prunus aviumhaplotype
11Pav-HB-07-4_11Prunus aviumhaplotype
12Pav-HB-07-4_12Prunus aviumhaplotype
13Pav-HB-07-4_13Prunus aviumhaplotype
14Pav-HB-07-4_14Prunus aviumhaplotype
15Pav-HB-07-4_15Prunus aviumhaplotype
16Pav-HB-07-4_16Prunus aviumhaplotype
17Pav-HB-07-4_17Prunus aviumhaplotype
18Pav-HB-07-4_18Prunus aviumhaplotype
19Pav-HB-07-4_19Prunus aviumhaplotype
20Pav-HB-07-4_20Prunus aviumhaplotype
21Pav-HB-07-4_21Prunus aviumhaplotype
22Pav-HB-07-4_22Prunus aviumhaplotype
23Pav-HB-07-4_23Prunus aviumhaplotype
24Pav-HB-07-4_24Prunus aviumhaplotype
25Pav-HB-07-4_25Prunus aviumhaplotype
26Pav-HB-07-4_26Prunus aviumhaplotype
27Pav-HB-07-4_27Prunus aviumhaplotype
28Pav-HB-07-4_28Prunus aviumhaplotype
29Pav-HB-07-4_29Prunus aviumhaplotype
30Pav-HB-07-4_30Prunus aviumhaplotype
31Pav-HB-07-4_31Prunus aviumhaplotype
32Pav-HB-07-4_32Prunus aviumhaplotype
33Pav-HB-07-4_33Prunus aviumhaplotype
34Pav-HB-07-4_34Prunus aviumhaplotype
35Pav-HB-07-4_35Prunus aviumhaplotype
36Pav-HB-07-4_36Prunus aviumhaplotype
37Pav-HB-07-4_37Prunus aviumhaplotype
38Pav-HB-07-4_38Prunus aviumhaplotype
39Pav-HB-07-4_39Prunus aviumhaplotype
40Pav-HB-07-4_40Prunus aviumhaplotype
41Pav-HB-07-4_41Prunus aviumhaplotype
42Pav-HB-07-4_42Prunus aviumhaplotype
43Pav-HB-07-4_43Prunus aviumhaplotype
44Pav-HB-07-4_44Prunus aviumhaplotype
45Pav-HB-07-4_45Prunus aviumhaplotype
46Pav-HB-07-4_46Prunus aviumhaplotype
47Pav-HB-07-4_47Prunus aviumhaplotype
48Pav-HB-07-4_48Prunus aviumhaplotype
49Pav-HB-07-4_49Prunus aviumhaplotype
50Pav-HB-07-4_50Prunus aviumhaplotype
51Pav-HB-07-4_51Prunus aviumhaplotype
52Pav-HB-07-4_52Prunus aviumhaplotype
53Pav-HB-07-4_53Prunus aviumhaplotype
54Pav-HB-07-4_54Prunus aviumhaplotype
55Pav-HB-07-4_55Prunus aviumhaplotype
56Pav-HB-07-4_56Prunus aviumhaplotype
57Pav-HB-07-4_57Prunus aviumhaplotype
58Pav-HB-07-4_58Prunus aviumhaplotype
59Pav-HB-07-4_59Prunus aviumhaplotype
60Pav-HB-07-4_60Prunus aviumhaplotype
61Pav-HB-07-4_61Prunus aviumhaplotype
62Pav-HB-07-4_62Prunus aviumhaplotype
63Pav-HB-07-4_63Prunus aviumhaplotype
64Pav-HB-07-4_64Prunus aviumhaplotype
65Pav-HB-07-4_65Prunus aviumhaplotype
66Pav-HB-07-4_66Prunus aviumhaplotype
67Pav-HB-07-4_67Prunus aviumhaplotype
68Pav-HB-07-4_68Prunus aviumhaplotype
69Pav-HB-07-4_69Prunus aviumhaplotype
70Pav-HB-07-4_70Prunus aviumhaplotype
71Pav-HB-07-4_71Prunus aviumhaplotype
72Pav-HB-07-4_72Prunus aviumhaplotype
73Pav-HB-07-4_73Prunus aviumhaplotype
74Pav-HB-07-4_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015G7N/A10.53R1674-276_7_08149634View
2Prunus-TE-6K cherry SNP-estimate7N/A13.95RosCOS1674-276_snp_sweet_cherry_Pp7_08149634View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate7N/A11.48RosCOS1674-276_snp_sweet_cherry_Pp7_08149634View
4Sweet Cherry-VxC-F1LG7N/A4.86RosCOS1674-276_snp_sweet_cherry_Pp7_08149634View
5Sweet Cherry-CxC-F2LG7N/A2.74RosCOS1674-276_snp_sweet_cherry_Pp7_08149634View
6Sweet Cherry-BCxBC-F2LG7N/A3.01RosCOS1674-276_snp_sweet_cherry_Pp7_08149634View
7Sweet Cherry-RosBREED-1.6K-20197N/A12.39RosCOS1674-276_snp_sweet_cherry_Pp7_08149634View
8Sweet Cherry-RosBREED-3.8K-20207N/A13.51RosCOS1674-276_snp_sweet_cherry_Pp7_08149634View
9Sweet Cherry-VxC-F1-6+9K_array7N/A7.4RosCOS1674-276_snp_sweet_cherry_Pp7_08149634View
10Sweet Cherry-BTK-F1-2013LG07N/A1.4ss490559192View
11Sweet Cherry-RL-F1-2013LG07N/A12.4ss490559192View
Alignments
Feature NameTypeLocationAnalysis
scaffold_7 supercontig scaffold_7:8149634..8149634. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp07 chromosome Pp07:8148906..8148906. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)